Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq223 93.3 4e-14 seq63 84.2 2e-11 >seq223 Length=82600 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 |||||| |||| || |||||||| || ||||||||||||||||| || ||||| || | Sbjct 41216 CCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGTATCTTGGCC 41275 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 || || || | || || | |||||||| | ||||| || ||||| ||||| Sbjct 41276 TTCACGTTATCGATAGTGTCCGAAGGCTCCACTTCGAGAGTTATAGTTTTGCCTGTCAAT 41335 Query 64424 GTTTTTACGAAAATTTGCATT 64444 ||||| || || ||||||||| Sbjct 41336 GTTTTGACAAATATTTGCATT 41356 Score = 89.7 bits (98), Expect = 5e-13 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || || ||||||||||| || ||||| |||||||| ||||| || || ||| ||| | Sbjct 42928 ATAAGACGCTGCTGGTCAGGTGGAATACCTTCTTTGTCTTGAATCTTAGTCTTAACATTC 42987 Query 64373 TCCACTGTATC-ACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTAC 64431 || | || || |||| || ||||| | ||| | |||||||| ||||| || || || Sbjct 42988 TCAATGGTGTCTGACGGC-TCTACTTCAAGAGTGATAGTCTTGCCCGTCAATGTCTTGAC 43046 Query 64432 GAAAATTTGCATT 64444 ||||||||||||| Sbjct 43047 GAAAATTTGCATT 43059 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| | || || ||||| || || || ||||| |||||||| ||||||||||| | Sbjct 42634 CCAGCAAAGATTAGTCGCTGTTGATCAGGCGGAATACCTTCTTTGTCTTGTATTTTAGTC 42693 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 |||||| || | ||||| | |||||||| | || | |||||||| || | | Sbjct 42694 TTTACATTTTCAATAGTATCCGAAGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTTAGA 42753 Query 64424 GTTTTTACGAAAATTTGCAT 64443 ||||| ||||| || ||||| Sbjct 42754 GTTTTCACGAATATCTGCAT 42773 >seq63 Length=178715 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 154026 ACTTGAAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAAC 154085 || ||||| ||||||| ||| || | ||| |||| |||| ||| ||| |||| | Sbjct 173560 ACCTGAAATTCGCCGGACAAAACTCTCCGCGTGTACAGATTGGATGTGTACGCTTCGATC 173501 Query 154086 GATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAA 154145 | |||||||||||| |||||||||||||| | || || |||||| || || | ||| Sbjct 173500 GCTTCGTTGTTGCCCAATATTTGAGCTGTGGACGCAGTTGGCATAGGAGCAACAAGCAAC 173441 Query 154146 GAGTTTCGCAAACC 154159 || || |||| ||| Sbjct 173440 GAATTGCGCACACC 173427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499618843452640