Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq223 93.3 4e-14
seq63 84.2 2e-11
>seq223
Length=82600
Score = 93.3 bits (102), Expect = 4e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363
|||||| |||| || |||||||| || ||||||||||||||||| || ||||| || |
Sbjct 41216 CCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGTATCTTGGCC 41275
Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423
|| || || | || || | |||||||| | ||||| || ||||| |||||
Sbjct 41276 TTCACGTTATCGATAGTGTCCGAAGGCTCCACTTCGAGAGTTATAGTTTTGCCTGTCAAT 41335
Query 64424 GTTTTTACGAAAATTTGCATT 64444
||||| || || |||||||||
Sbjct 41336 GTTTTGACAAATATTTGCATT 41356
Score = 89.7 bits (98), Expect = 5e-13
Identities = 101/133 (76%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372
|| || ||||||||||| || ||||| |||||||| ||||| || || ||| ||| |
Sbjct 42928 ATAAGACGCTGCTGGTCAGGTGGAATACCTTCTTTGTCTTGAATCTTAGTCTTAACATTC 42987
Query 64373 TCCACTGTATC-ACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTAC 64431
|| | || || |||| || ||||| | ||| | |||||||| ||||| || || ||
Sbjct 42988 TCAATGGTGTCTGACGGC-TCTACTTCAAGAGTGATAGTCTTGCCCGTCAATGTCTTGAC 43046
Query 64432 GAAAATTTGCATT 64444
|||||||||||||
Sbjct 43047 GAAAATTTGCATT 43059
Score = 82.4 bits (90), Expect = 8e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363
|| ||| | || || ||||| || || || ||||| |||||||| ||||||||||| |
Sbjct 42634 CCAGCAAAGATTAGTCGCTGTTGATCAGGCGGAATACCTTCTTTGTCTTGTATTTTAGTC 42693
Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423
|||||| || | ||||| | |||||||| | || | |||||||| || | |
Sbjct 42694 TTTACATTTTCAATAGTATCCGAAGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTTAGA 42753
Query 64424 GTTTTTACGAAAATTTGCAT 64443
||||| ||||| || |||||
Sbjct 42754 GTTTTCACGAATATCTGCAT 42773
>seq63
Length=178715
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 154026 ACTTGAAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAAC 154085
|| ||||| ||||||| ||| || | ||| |||| |||| ||| ||| |||| |
Sbjct 173560 ACCTGAAATTCGCCGGACAAAACTCTCCGCGTGTACAGATTGGATGTGTACGCTTCGATC 173501
Query 154086 GATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAA 154145
| |||||||||||| |||||||||||||| | || || |||||| || || | |||
Sbjct 173500 GCTTCGTTGTTGCCCAATATTTGAGCTGTGGACGCAGTTGGCATAGGAGCAACAAGCAAC 173441
Query 154146 GAGTTTCGCAAACC 154159
|| || |||| |||
Sbjct 173440 GAATTGCGCACACC 173427
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499618843452640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |