Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_011055.1 Length=76312 Score E Sequences producing significant alignments: (Bits) Value seq904 178 6e-40 >seq904 Length=17929 Score = 178 bits (196), Expect = 6e-40 Identities = 405/603 (67%), Gaps = 15/603 (2%) Strand=Plus/Minus Query 65131 CCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGT 65190 |||| |||||| | || ||||||||||| || |||||||| || || | || ||| Sbjct 5108 CCGATGGGCCGTATCGTCGAAATCTACGGACCGGAATCTTCCGGTAAAACCACGCTGACG 5049 Query 65191 CTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAG 65250 || || | | | ||| |||||| | ||| | | || | ||||| ||||| Sbjct 5048 CTGCAGGTGATCGCCGCAGCGCAGCGTGAAGGTAAAACCTGTGCGTTTATCGATGCTGAA 4989 Query 65251 CACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTG 65310 ||| | |||||||| ||||| || || || || |||||||||| || || Sbjct 4988 CACGCGCTGGACCCAATCTACGCACGTAAACTGGGCGTCGATATCGACAACCTGCTG-TG 4930 Query 65311 GTTC-AGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGG 65369 | | |||||||||| ||||||||||| ||||| ||| |||| ||| | ||||| Sbjct 4929 CTCCCAGCCGGACACCGGCGAGCAGGCACTGGAAATCTGTGACGCCCTGGCGCGTTCTGG 4870 Query 65370 CGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGA 65429 || | | | ||||||||||||| |||||||| ||| |||| || || |||| Sbjct 4869 CGCAGTAGACGTTATCGTCGTTGACTCCGTGGCGGCACTGACGCCGAAAGCGGAAATCGA 4810 Query 65430 AGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCG 65489 |||||| ||||| ||| |||| | ||||| || || | ||| ||||| ||||| Sbjct 4809 AGGCGAAATCGGCGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCG 4750 Query 65490 CAAGCTCACTGGCACCATCTCCAGCA--CCAACACGCTGACGCTCTGGGTCAACCAGTTG 65547 ||||| | || | | || |||| ||||||||||| | ||| |||||||| | Sbjct 4749 TAAGCTGGCGGGTA--ACCTGAAGCAGTCCAACACGCTGCTGATCTTCATCAACCAGATC 4692 Query 65548 CGCGAGAAGATCGGCAACGTGGGCTACGG---CCCGAACGAGACCACCACGGGCGGCAAG 65604 || ||| || || ||| | ||| |||| || ||||| || || || || Sbjct 4691 CGTATGAAAATTGG---TGTGATGTTCGGTAACCCG---GAAACCACTACCGGTGGTAAC 4638 Query 65605 GCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAA 65664 || ||| ||||||||||| || || | || ||||||| |||| | | | ||| || Sbjct 4637 GCGCTGAAATTCTACGCCTCTGTTCGTCTCGACATCCGTCGTATCGGCGCGGTGAAAGAG 4578 Query 65665 GGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCG 65724 ||||| | | || || | | ||||| ||||| || || |||||||| | || || Sbjct 4577 GGCGAAAACGTGGTGGGTAGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCGCTGCG 4518 Query 65725 CCG 65727 ||| Sbjct 4517 CCG 4515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 244061237367068