Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq904 156 2e-33 >seq904 Length=17929 Score = 156 bits (172), Expect = 2e-33 Identities = 553/851 (65%), Gaps = 31/851 (4%) Strand=Plus/Minus Query 65903 TGTGGACACCATTCCCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTA 65962 |||||| ||||| | ||||| ||| | | ||||| ||| || || | || ||| Sbjct 5169 TGTGGAAACCATCTCTACCGGTTCGCTTTCACTGGATATCGCGCTTGGGG-CAGGTGGTC 5111 Query 65963 T-CCGAGGGGCCGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGT 66021 | |||| |||||| | || || |||||||| || || ||||| || || | ||| || Sbjct 5110 TGCCGATGGGCCGTATCGTCGAAATCTACGGACCGGAATCTTCCGGTAAAACCACGCTGA 5051 Query 66022 GCCTCCACGCGGTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCG 66081 || || | | | ||| || ||| | ||| | | || | ||||| || | Sbjct 5050 CGCTGCAGGTGATCGCCGCAGCGCAGCGTGAAGGTAAAACCTGTGCGTTTATCGATGCTG 4991 Query 66082 AACATTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGG 66141 |||| | || ||||| ||||| || || || ||| ||||||| || | Sbjct 4990 AACACGCGCTGGACCCAATCTACGCACGTAAACTGGGCGTCGATATCGACAACCT----G 4935 Query 66142 TTGTGC----AGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAG 66197 ||||| |||| ||||| ||||||||||| ||||| ||| |||| || | Sbjct 4934 CTGTGCTCCCAGCCGGACACCGGCGAGCAGGCACTGGAAATCTGTGACGCCCTGGCGCGT 4875 Query 66198 TCTGGCGAGGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAG 66257 ||||||| || | | ||||| || ||||| |||||||| ||| |||| ||||| Sbjct 4874 TCTGGCGCAGTAGACGTTATCGTCGTTGACTCCGTGGCGGCACTGACGCCGAAAGCGGAA 4815 Query 66258 CTCGAAGGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCC 66317 ||||||| || ||||| ||||| ||| | ||||| || || ||||| ||||| Sbjct 4814 ATCGAAGGCGAAATCGGCGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCG 4755 Query 66318 ATGCGCAAGCTGACCGGCACGATTGCCAGCA--CCAACACGCTCACCCTGTGGGTGAATC 66375 ||||| |||||| | || | | |||| |||||||||| | | | || | Sbjct 4754 ATGCGTAAGCTGGCGGGTA--ACCTGAAGCAGTCCAACACGCTGCTGATCTTCATCAACC 4697 Query 66376 AGCTGCGCGAGAAGATCGGCAACGTGGGCTACGG---CCCGAATGAGACCACCACCGGTG 66432 || | || ||| || || ||| | ||| |||| || ||||| ||||||| Sbjct 4696 AGATCCGTATGAAAATTGG---TGTGATGTTCGGTAACCCG---GAAACCACTACCGGTG 4643 Query 66433 GTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGA 66492 |||| || ||| ||||||||||| || ||| | || |||| | |||| | | | || Sbjct 4642 GTAACGCGCTGAAATTCTACGCCTCTGTTCGTCTCGACATCCGTCGTATCGGCGCGGTGA 4583 Query 66493 AGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGG 66552 | || ||||| | | || || | | || |||||||| || || |||||||| | | Sbjct 4582 AAGAGGGCGAAAACGTGGTGGGTAGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCG 4523 Query 66553 CGCCTCCGCACCGCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGGCATTTCCCGCGAGG 66612 | | ||| |||||||| || ||| |||||||||| || || | | | | Sbjct 4522 CTGCGCCGTTTAAACAGGCTGAATTCCAGATCCTCTACGGCGAAGGTATCAACTTCTACG 4463 Query 66613 CTGAACTCCTCGACATGGCCGTTTCCCGAG-GGCTCATCAAGAAGTCTGGGGCCTGGTTC 66671 ||||| | ||| ||| || | ||| ||| ||| |||| | || || |||| | Sbjct 4462 GCGAACTGGTTGACCTGGGCG-TAAAAGAGAAGCTGATCGAGAAAGCAGGCGCGTGGTAC 4404 Query 66672 AAGTACGGGGACAAGAACATCGGCCAGGGCAAGCCCAA---GACCGTGCAGTGGCTGAAG 66728 | ||| | |||| ||||| ||||| || | || ||| ||| |||||||| Sbjct 4403 AGCTACAAAGGTGAGAAGATCGGTCAGGGTAAAGCGAATGCGAC--TGC-CTGGCTGAAA 4347 Query 66729 GACAACCCGGA 66739 || |||||||| Sbjct 4346 GATAACCCGGA 4336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242458118571152