Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_011056.1
Length=75811
Score E
Sequences producing significant alignments: (Bits) Value
seq904 156 2e-33
>seq904
Length=17929
Score = 156 bits (172), Expect = 2e-33
Identities = 553/851 (65%), Gaps = 31/851 (4%)
Strand=Plus/Minus
Query 65903 TGTGGACACCATTCCCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTA 65962
|||||| ||||| | ||||| ||| | | ||||| ||| || || | || |||
Sbjct 5169 TGTGGAAACCATCTCTACCGGTTCGCTTTCACTGGATATCGCGCTTGGGG-CAGGTGGTC 5111
Query 65963 T-CCGAGGGGCCGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGT 66021
| |||| |||||| | || || |||||||| || || ||||| || || | ||| ||
Sbjct 5110 TGCCGATGGGCCGTATCGTCGAAATCTACGGACCGGAATCTTCCGGTAAAACCACGCTGA 5051
Query 66022 GCCTCCACGCGGTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCG 66081
|| || | | | ||| || ||| | ||| | | || | ||||| || |
Sbjct 5050 CGCTGCAGGTGATCGCCGCAGCGCAGCGTGAAGGTAAAACCTGTGCGTTTATCGATGCTG 4991
Query 66082 AACATTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGG 66141
|||| | || ||||| ||||| || || || ||| ||||||| || |
Sbjct 4990 AACACGCGCTGGACCCAATCTACGCACGTAAACTGGGCGTCGATATCGACAACCT----G 4935
Query 66142 TTGTGC----AGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAG 66197
||||| |||| ||||| ||||||||||| ||||| ||| |||| || |
Sbjct 4934 CTGTGCTCCCAGCCGGACACCGGCGAGCAGGCACTGGAAATCTGTGACGCCCTGGCGCGT 4875
Query 66198 TCTGGCGAGGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAG 66257
||||||| || | | ||||| || ||||| |||||||| ||| |||| |||||
Sbjct 4874 TCTGGCGCAGTAGACGTTATCGTCGTTGACTCCGTGGCGGCACTGACGCCGAAAGCGGAA 4815
Query 66258 CTCGAAGGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCC 66317
||||||| || ||||| ||||| ||| | ||||| || || ||||| |||||
Sbjct 4814 ATCGAAGGCGAAATCGGCGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCG 4755
Query 66318 ATGCGCAAGCTGACCGGCACGATTGCCAGCA--CCAACACGCTCACCCTGTGGGTGAATC 66375
||||| |||||| | || | | |||| |||||||||| | | | || |
Sbjct 4754 ATGCGTAAGCTGGCGGGTA--ACCTGAAGCAGTCCAACACGCTGCTGATCTTCATCAACC 4697
Query 66376 AGCTGCGCGAGAAGATCGGCAACGTGGGCTACGG---CCCGAATGAGACCACCACCGGTG 66432
|| | || ||| || || ||| | ||| |||| || ||||| |||||||
Sbjct 4696 AGATCCGTATGAAAATTGG---TGTGATGTTCGGTAACCCG---GAAACCACTACCGGTG 4643
Query 66433 GTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGA 66492
|||| || ||| ||||||||||| || ||| | || |||| | |||| | | | ||
Sbjct 4642 GTAACGCGCTGAAATTCTACGCCTCTGTTCGTCTCGACATCCGTCGTATCGGCGCGGTGA 4583
Query 66493 AGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGG 66552
| || ||||| | | || || | | || |||||||| || || |||||||| | |
Sbjct 4582 AAGAGGGCGAAAACGTGGTGGGTAGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCG 4523
Query 66553 CGCCTCCGCACCGCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGGCATTTCCCGCGAGG 66612
| | ||| |||||||| || ||| |||||||||| || || | | | |
Sbjct 4522 CTGCGCCGTTTAAACAGGCTGAATTCCAGATCCTCTACGGCGAAGGTATCAACTTCTACG 4463
Query 66613 CTGAACTCCTCGACATGGCCGTTTCCCGAG-GGCTCATCAAGAAGTCTGGGGCCTGGTTC 66671
||||| | ||| ||| || | ||| ||| ||| |||| | || || |||| |
Sbjct 4462 GCGAACTGGTTGACCTGGGCG-TAAAAGAGAAGCTGATCGAGAAAGCAGGCGCGTGGTAC 4404
Query 66672 AAGTACGGGGACAAGAACATCGGCCAGGGCAAGCCCAA---GACCGTGCAGTGGCTGAAG 66728
| ||| | |||| ||||| ||||| || | || ||| ||| ||||||||
Sbjct 4403 AGCTACAAAGGTGAGAAGATCGGTCAGGGTAAAGCGAATGCGAC--TGC-CTGGCTGAAA 4347
Query 66729 GACAACCCGGA 66739
|| ||||||||
Sbjct 4346 GATAACCCGGA 4336
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 242458118571152
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |