Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_011269.1 Length=154017 Score E Sequences producing significant alignments: (Bits) Value seq1870 89.7 5e-13 seq1599 89.7 5e-13 >seq1870 Length=4832 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 90789 CGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGTTGTCGCAGGTTCGAA 90848 |||| |||| |||| |||| ||||| ||||||||||||||||| |||||||||||||| Sbjct 233 CGGGAAGTAGCTCAGCTTGGTAGAGCACTTGGTTTGGGACCAAGGGGTCGCAGGTTCGAA 174 Query 90849 TCCTGTCACCCCGA 90862 ||||||| ||||| Sbjct 173 TCCTGTCTTCCCGA 160 >seq1599 Length=6876 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 90789 CGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGTTGTCGCAGGTTCGAA 90848 |||| |||| |||| |||| ||||| ||||||||||||||||| |||||||||||||| Sbjct 1287 CGGGAAGTAGCTCAGCTTGGTAGAGCACTTGGTTTGGGACCAAGGGGTCGCAGGTTCGAA 1346 Query 90849 TCCTGTCACCCCGA 90862 ||||||| ||||| Sbjct 1347 TCCTGTCTTCCCGA 1360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 492700802863520