Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq53 84.2 2e-11 >seq53 Length=190479 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 118179 CCGTCGCGACCGGCCCTTCCTATCTCTTGATAATAACCGTCCAGTGATTTGGGCATACTG 118238 ||||| | ||||| | || |||| ||||||||||| || | ||||| |||| |||| Sbjct 95101 CCGTCCCTGCCGGCACGACCCGTCTCCTGATAATAACCTTCGATCGATTTTGGCAAACTG 95042 Query 118239 TGATGTATCACCAACCGCACGTCGGGTTTATCGATGCCCATCCCGAACGCTATCGTCGAA 118298 | |||||| || || || ||||| || || || |||||||| || || ||||| || | Sbjct 95041 TTATGTATGACGAAGCGAACGTCCGGCTTGTCAATGCCCATACCAAAGGCTATAGTAGCG 94982 Query 118299 CATATCACT 118307 || || ||| Sbjct 94981 CAGATAACT 94973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381753462730464