Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq223 86.0 6e-12 >seq223 Length=82600 Score = 86.0 bits (94), Expect = 6e-12 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 138471 TTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTT 138530 || ||| | | | |||| ||||| || || || || || ||||||||||| || ||| Sbjct 42348 TTCACCAGCAAAAATTAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTC-TTGTATTT 42406 Query 138531 TTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAG 138589 ||||||||| | ||| | |||||| | || |||||| |||| || | ||||| |||| Sbjct 42407 TTGTTTTAACGTTTTCAATGGTGTCTGACGGCTCCACTTCGAGGGTGATTGTTTTTCCAG 42466 Query 138590 TCAGAGTTTTTACAAAAATCTGCATG 138615 | || ||||| || || || |||||| Sbjct 42467 TAAGCGTTTTAACGAATATTTGCATG 42492 Score = 82.4 bits (90), Expect = 8e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 138482 AGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATT 138541 |||||||||||||||| |||||||| || ||||| || || ||||| | || | | Sbjct 43784 AGATTAGACGCTGTTGATCCGGAGGAATGCCTTCCTTATCTTGAATTTTATTCTTCACAT 43843 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 ||| | | ||| | || ||| || || | ||| | ||||| || || || ||||| | Sbjct 43844 TTTCAATTGAGTCAGACGGCTCAACTTCAAGCGTAATGGTTTTTCCCGTGAGCGTTTTCA 43903 Query 138602 CAAAAATCTGCATGGCTT 138619 | ||||||||||| |||| Sbjct 43904 CGAAAATCTGCATTGCTT 43921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496236619168320