Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq223 86.0 6e-12
>seq223
Length=82600
Score = 86.0 bits (94), Expect = 6e-12
Identities = 108/146 (74%), Gaps = 2/146 (1%)
Strand=Plus/Plus
Query 138471 TTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTT 138530
|| ||| | | | |||| ||||| || || || || || ||||||||||| || |||
Sbjct 42348 TTCACCAGCAAAAATTAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTC-TTGTATTT 42406
Query 138531 TTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAG 138589
||||||||| | ||| | |||||| | || |||||| |||| || | ||||| ||||
Sbjct 42407 TTGTTTTAACGTTTTCAATGGTGTCTGACGGCTCCACTTCGAGGGTGATTGTTTTTCCAG 42466
Query 138590 TCAGAGTTTTTACAAAAATCTGCATG 138615
| || ||||| || || || ||||||
Sbjct 42467 TAAGCGTTTTAACGAATATTTGCATG 42492
Score = 82.4 bits (90), Expect = 8e-11
Identities = 101/138 (73%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 138482 AGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATT 138541
|||||||||||||||| |||||||| || ||||| || || ||||| | || | |
Sbjct 43784 AGATTAGACGCTGTTGATCCGGAGGAATGCCTTCCTTATCTTGAATTTTATTCTTCACAT 43843
Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601
||| | | ||| | || ||| || || | ||| | ||||| || || || ||||| |
Sbjct 43844 TTTCAATTGAGTCAGACGGCTCAACTTCAAGCGTAATGGTTTTTCCCGTGAGCGTTTTCA 43903
Query 138602 CAAAAATCTGCATGGCTT 138619
| ||||||||||| ||||
Sbjct 43904 CGAAAATCTGCATTGCTT 43921
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496236619168320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |