Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_011551.1 Length=39867 Score E Sequences producing significant alignments: (Bits) Value seq1066 138 3e-28 >seq1066 Length=13853 Score = 138 bits (152), Expect = 3e-28 Identities = 139/178 (78%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 29209 CTGTTCCAGTTCTTTCCAACGATCAACCAGGCAAGCCGTAAATTCAGGGCAAAGTTGAGC 29268 || ||||||||| ||||||||| ||||||| || || ||||| ||||||||||| || Sbjct 9679 CTCTTCCAGTTCGCGCCAACGATCTACCAGGCGGGCAGTGAATTCCGGGCAAAGTTGTGC 9738 Query 29269 AACAACAATAATGCTGTCACGTTTACCTTGTTCACCTTCAAAAATAAAAACTTCAGTAAA 29328 || ||||| |||||||| ||||| |||||||| ||||| |||||| | | | || || Sbjct 9739 GACGACAATGATGCTGTCGCGTTTGCCTTGTTCGCCTTCGAAAATATATGCGTTTGTGAA 9798 Query 29329 GCGATTTGGGCTATTTGATTGTTTATTCTCAACTTTCTCAGATTG-AGGAAGTTGAAT 29385 ||| ||||| |||||||| ||||||||||| | |||| |||||||||||| Sbjct 9799 TTTGTTTTGGCTAAATGATTGTTCGTTCTCAACTTT-TTGCATTGCAGGAAGTTGAAT 9855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127446509885688