Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq223 96.9 3e-15
>seq223
Length=82600
Score = 96.9 bits (106), Expect = 3e-15
Identities = 108/142 (76%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033
|| ||| ||||||| || |||||||| || || ||||| ||||||||| ||| ||| |||
Sbjct 43496 CCGGCGAAGATCAACCGTTGCTGATCCGGGGGGATGCCTTCCTTGTCC-TGAATTTTTGC 43554
Query 127034 -TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAG 127092
|| | | || || ||||||| | || ||||| | || | ||||||||||| |
Sbjct 43555 CTTTACGTTCTCAACCGTGTCCGAAGGTTCCACTTCTAATGTTATTGTTTTGCCGGTTAA 43614
Query 127093 AGTTTTTACAAAAATCTGCATG 127114
||| || |||||||||||||||
Sbjct 43615 AGTCTTGACAAAAATCTGCATG 43636
Score = 82.4 bits (90), Expect = 7e-11
Identities = 105/145 (72%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 126969 GTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTT 127028
|||| || || | || |||||||||||||| || || || ||||| ||||| ||| |
Sbjct 41493 GTTTACCTGCAAAAATTAATCGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGGATCT 41552
Query 127029 TCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGG 127088
|| ||||| | ||| | ||| |||| | ||| ||||| | || | || || || |
Sbjct 41553 TCGCCTTGACATTTTCTATGGTATCCGAAGGCTCCACTTCCAAAGTAATAGTCTTCCCTG 41612
Query 127089 TCAGAGTTTTTACAAAAATCTGCAT 127113
|||| ||||| || || ||||||||
Sbjct 41613 TCAGCGTTTTCACGAATATCTGCAT 41637
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475476097733440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |