Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_012638.1 Length=165429 Score E Sequences producing significant alignments: (Bits) Value seq732 96.9 4e-15 >seq732 Length=24842 Score = 96.9 bits (106), Expect = 4e-15 Identities = 202/297 (68%), Gaps = 8/297 (3%) Strand=Plus/Minus Query 41110 ATATCAGGATACATCCTTTTGCTTGCGCACTCTAGAGCAAGCTGTTTAATATCATAGTTC 41169 ||||| |||||||| | |||||||||||||| || || |||||||| || || |||||| Sbjct 447 ATATCCGGATACATGCGCTTGCTTGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTTC 388 Query 41170 GGATCGTCTTTATAAAGATTAACACCTTCTTCAA-CGAACATAACAAGCTTAGGGAAAAT 41228 |||||| |||| | | | || | ||| || || || | | || || || ||||| | Sbjct 387 GGATCGCCTTTTTTATGGTTCAGACCATCGCGAATCGCA-AACACCAGTTTCGGGAACAC 329 Query 41229 AGGAGTTATCCCATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAAT 41288 | |||| | | | ||| || ||| ||||| || ||| || | || |||||| Sbjct 328 CGCAGTTTTACGGTTTTTACCGAGGCCTGCGATACGGTTACGCAGGATAGATTCCTGAAT 269 Query 41289 CATTCG---TTCAGTCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGCGTTTG 41345 || || ||| |||| || ||| |||||| || |||||||| ||||| || Sbjct 268 CAGGCGCGATTC---CCAGCTGGTGCCCAGACCAAAACCAAAGGTTACAAACGGCGTCTG 212 Query 41346 TCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTA 41402 ||||| | | || || |||||||| || || | ||||| |||||||| Sbjct 211 ACCGTTGGCGGTGTGCAGGGTGTTTACTTCGTACTCCAGCGACTGGAAGGCATCGTA 155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529217305732640