Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq223 100 3e-16
>seq223
Length=82600
Score = 100 bits (110), Expect = 3e-16
Identities = 103/132 (78%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG-C 45268
|| ||||| ||||| || || |||||||||||||| ||||| | ||||||||| | ||
Sbjct 42361 ATTAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGTA-TTTTTGTTTTAACGTT 42419
Query 45269 TTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTAC 45328
||| | |||||| || | ||| |||||||| || | ||||| || || || ||||| ||
Sbjct 42420 TTCAATGGTGTCTGACGGCTCCACTTCGAGGGTGATTGTTTTTCCAGTAAGCGTTTTAAC 42479
Query 45329 AAAAATTTGCAT 45340
|| ||||||||
Sbjct 42480 GAATATTTGCAT 42491
Score = 98.7 bits (108), Expect = 9e-16
Identities = 108/141 (77%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260
|| ||| | ||||| |||||||| ||||| || |||||||| || || |||||||||
Sbjct 43496 CCGGCGAAGATCAACCGTTGCTGATCCGGGGGGATGCCTTCCTTGTCCTGAATTTTTGCC 43555
Query 45261 TTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAG 45319
|| | || | || || ||||| |||| || ||||| | || | |||||||||||||
Sbjct 43556 TTTA-CGTTCTCAACCGTGTCCGAAGGTTCCACTTCTAATGTTATTGTTTTGCCGGTTAA 43614
Query 45320 AGTTTTTACAAAAATTTGCAT 45340
||| || |||||||| |||||
Sbjct 43615 AGTCTTGACAAAAATCTGCAT 43635
Score = 93.3 bits (102), Expect = 4e-14
Identities = 99/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269
|| || ||||| || || || ||||| ||||| ||||| |||||||| ||| | |
Sbjct 42077 ATTAAACGTTGTTGATCAGGTGGAATACCTTCCTTATCCTGAATTTTGGCTTTCACGTTT 42136
Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329
|| | ||||| || | ||| ||||| || || | ||||| ||||||| |||||| |||
Sbjct 42137 TCAATAGTGTCCGACGGCTCCACTTCCAGCGTTATTGTTTTTCCGGTTAAAGTTTTCACA 42196
Query 45330 AAAATTTGCAT 45340
|||||||||||
Sbjct 42197 AAAATTTGCAT 42207
Score = 91.5 bits (100), Expect = 1e-13
Identities = 98/127 (77%), Gaps = 2/127 (2%)
Strand=Plus/Plus
Query 45215 TCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTA 45273
||| ||||| || || || || ||||| |||||||||||||| || | || | || |
Sbjct 43214 TCGCTGCTGATCTGGAGGGATTCCTTCCTTATCTTGAATTTTCGTCTTCA-CGTTATCAA 43272
Query 45274 CGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAA 45333
||| ||||| | ||| ||||| || |||| |||||||||||||| ||||| ||||| |
Sbjct 43273 TGGTATCGGACGGCTCAACTTCCAGCGTAATAGTTTTGCCGGTTAGCGTTTTCACAAATA 43332
Query 45334 TTTGCAT 45340
| |||||
Sbjct 43333 TCTGCAT 43339
Score = 89.7 bits (98), Expect = 5e-13
Identities = 109/146 (75%), Gaps = 2/146 (1%)
Strand=Plus/Plus
Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255
|||| || ||| | |||| || || ||||| || || || || || |||||||||||||
Sbjct 41781 GTTTACCGGCGAAAATCAGGCGCTGTTGGTCGGGTGGTATCCCCTCCTTATCTTGAATTT 41840
Query 45256 TTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314
| || | || | || | || || || | ||||||||| || || | ||||||||
Sbjct 41841 TCGTCTTTA-CGTTCTCGATCGTATCCGACGGCTCGACTTCCAGGGTGATTGTTTTGCCA 41899
Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340
||||||||||| ||||| ||||||||
Sbjct 41900 GTTAGAGTTTTCACAAAGATTTGCAT 41925
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260
|||||| | || | || || || ||||| ||||||||||| |||||||||||||| |
Sbjct 43777 CCTGCGAAGATTAGACGCTGTTGATCCGGAGGAATGCCTTCCTTATCTTGAATTTTATTC 43836
Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320
|| | ||| | | ||| || | ||| ||||| || |||| ||||| || || ||
Sbjct 43837 TTCACATTTTCAATTGAGTCAGACGGCTCAACTTCAAGCGTAATGGTTTTTCCCGTGAGC 43896
Query 45321 GTTTTTACAAAAATTTGCATCGC 45343
||||| || ||||| ||||| ||
Sbjct 43897 GTTTTCACGAAAATCTGCATTGC 43919
Score = 84.2 bits (92), Expect = 2e-11
Identities = 107/145 (74%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256
||| |||||| | || | || |||||||| || ||||| |||||||| |||||||| ||
Sbjct 42915 TTTACCTGCGAAGATAAGACGCTGCTGGTCAGGTGGAATACCTTCTTTGTCTTGAATCTT 42974
Query 45257 TTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315
|| | | | | || | |||||| || | ||| ||||| ||||| | || ||||| |
Sbjct 42975 A-GTCTTAACATTCTCAATGGTGTCTGACGGCTCTACTTCAAGAGTGATAGTCTTGCCCG 43033
Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340
| | || || || |||||||||||
Sbjct 43034 TCAATGTCTTGACGAAAATTTGCAT 43058
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451979718433760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |