Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq223 100 3e-16 >seq223 Length=82600 Score = 100 bits (110), Expect = 3e-16 Identities = 103/132 (78%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG-C 45268 || ||||| ||||| || || |||||||||||||| ||||| | ||||||||| | || Sbjct 42361 ATTAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGTA-TTTTTGTTTTAACGTT 42419 Query 45269 TTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTAC 45328 ||| | |||||| || | ||| |||||||| || | ||||| || || || ||||| || Sbjct 42420 TTCAATGGTGTCTGACGGCTCCACTTCGAGGGTGATTGTTTTTCCAGTAAGCGTTTTAAC 42479 Query 45329 AAAAATTTGCAT 45340 || |||||||| Sbjct 42480 GAATATTTGCAT 42491 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 || ||| | ||||| |||||||| ||||| || |||||||| || || ||||||||| Sbjct 43496 CCGGCGAAGATCAACCGTTGCTGATCCGGGGGGATGCCTTCCTTGTCCTGAATTTTTGCC 43555 Query 45261 TTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAG 45319 || | || | || || ||||| |||| || ||||| | || | ||||||||||||| Sbjct 43556 TTTA-CGTTCTCAACCGTGTCCGAAGGTTCCACTTCTAATGTTATTGTTTTGCCGGTTAA 43614 Query 45320 AGTTTTTACAAAAATTTGCAT 45340 ||| || |||||||| ||||| Sbjct 43615 AGTCTTGACAAAAATCTGCAT 43635 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 || || ||||| || || || ||||| ||||| ||||| |||||||| ||| | | Sbjct 42077 ATTAAACGTTGTTGATCAGGTGGAATACCTTCCTTATCCTGAATTTTGGCTTTCACGTTT 42136 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 || | ||||| || | ||| ||||| || || | ||||| ||||||| |||||| ||| Sbjct 42137 TCAATAGTGTCCGACGGCTCCACTTCCAGCGTTATTGTTTTTCCGGTTAAAGTTTTCACA 42196 Query 45330 AAAATTTGCAT 45340 ||||||||||| Sbjct 42197 AAAATTTGCAT 42207 Score = 91.5 bits (100), Expect = 1e-13 Identities = 98/127 (77%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 45215 TCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTA 45273 ||| ||||| || || || || ||||| |||||||||||||| || | || | || | Sbjct 43214 TCGCTGCTGATCTGGAGGGATTCCTTCCTTATCTTGAATTTTCGTCTTCA-CGTTATCAA 43272 Query 45274 CGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAA 45333 ||| ||||| | ||| ||||| || |||| |||||||||||||| ||||| ||||| | Sbjct 43273 TGGTATCGGACGGCTCAACTTCCAGCGTAATAGTTTTGCCGGTTAGCGTTTTCACAAATA 43332 Query 45334 TTTGCAT 45340 | ||||| Sbjct 43333 TCTGCAT 43339 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255 |||| || ||| | |||| || || ||||| || || || || || ||||||||||||| Sbjct 41781 GTTTACCGGCGAAAATCAGGCGCTGTTGGTCGGGTGGTATCCCCTCCTTATCTTGAATTT 41840 Query 45256 TTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 | || | || | || | || || || | ||||||||| || || | |||||||| Sbjct 41841 TCGTCTTTA-CGTTCTCGATCGTATCCGACGGCTCGACTTCCAGGGTGATTGTTTTGCCA 41899 Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||||| ||||| |||||||| Sbjct 41900 GTTAGAGTTTTCACAAAGATTTGCAT 41925 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 |||||| | || | || || || ||||| ||||||||||| |||||||||||||| | Sbjct 43777 CCTGCGAAGATTAGACGCTGTTGATCCGGAGGAATGCCTTCCTTATCTTGAATTTTATTC 43836 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 || | ||| | | ||| || | ||| ||||| || |||| ||||| || || || Sbjct 43837 TTCACATTTTCAATTGAGTCAGACGGCTCAACTTCAAGCGTAATGGTTTTTCCCGTGAGC 43896 Query 45321 GTTTTTACAAAAATTTGCATCGC 45343 ||||| || ||||| ||||| || Sbjct 43897 GTTTTCACGAAAATCTGCATTGC 43919 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||| |||||| | || | || |||||||| || ||||| |||||||| |||||||| || Sbjct 42915 TTTACCTGCGAAGATAAGACGCTGCTGGTCAGGTGGAATACCTTCTTTGTCTTGAATCTT 42974 Query 45257 TTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 || | | | | || | |||||| || | ||| ||||| ||||| | || ||||| | Sbjct 42975 A-GTCTTAACATTCTCAATGGTGTCTGACGGCTCTACTTCAAGAGTGATAGTCTTGCCCG 43033 Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340 | | || || || ||||||||||| Sbjct 43034 TCAATGTCTTGACGAAAATTTGCAT 43058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451979718433760