Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_012663.1 Length=60074 Score E Sequences producing significant alignments: (Bits) Value seq1599 104 9e-18 seq1870 93.3 2e-14 >seq1599 Length=6876 Score = 104 bits (114), Expect = 9e-18 Identities = 74/85 (87%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 59726 CCTATGCCGACTACAGGACTTGAACCTGTGACCTTCTGATTACAAATCAGACGCTCTACC 59785 ||||||||| ||||| ||||||||| | |||| ||||||||||||||||| |||||||| Sbjct 1015 CCTATGCCGGCTACATGACTTGAACACGCGACCCTCTGATTACAAATCAGATGCTCTACC 956 Query 59786 AACTGAGCTAAATCGGCTAATTGCT 59810 ||||||||||| |||||| || || Sbjct 955 AACTGAGCTAAGCCGGCTACTTTCT 931 >seq1870 Length=4832 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 59729 ATGCCGACTACAGGACTTGAACCTGTGACCTTCTGATTACAAATCAGACGCTCTACCAAC 59788 |||||| ||| |||||||||||| |||| ||||||||||||||||| ||||||||||| Sbjct 507 ATGCCGGCTAAAGGACTTGAACCCTCGACCCTCTGATTACAAATCAGATGCTCTACCAAC 566 Query 59789 TGAGCTAAATCGGC 59802 |||||||| |||| Sbjct 567 TGAGCTAAGCCGGC 580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192105718634592