Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_012740.1
Length=166418
Score E
Sequences producing significant alignments: (Bits) Value
seq732 93.3 4e-14
>seq732
Length=24842
Score = 93.3 bits (102), Expect = 4e-14
Identities = 190/280 (68%), Gaps = 2/280 (1%)
Strand=Plus/Minus
Query 37531 ATCAGGGTAAAGACGCTTACTAGAACATTCCAATGCAAGTTGCTTAATGTCGTAGTTCGG 37590
||| || || | ||||| || | || |||| || || || || ||||||||||||||
Sbjct 445 ATCCGGATACATGCGCTTGCTTGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTTCGG 386
Query 37591 ATCTTCCGGTTTAAGGTTTAATCCTTCTTCTAAGAAC-ATCACCAGCTTAGGAAACACCG 37649
||| | |||| |||| | || || | || | | |||||| || || |||||||
Sbjct 385 ATCGCCTTTTTTATGGTTCAGACCATC-GCGAATCGCAAACACCAGTTTCGGGAACACCG 327
Query 37650 GAGTTATACCGTCTTTACCTAAACCTTTAGTTCGAACTTTCAGGATCGCTTTCTGAATCA 37709
|||| ||| || |||||| | ||| | || |||||| | || ||||||||
Sbjct 326 CAGTTTTACGGTTTTTACCGAGGCCTGCGATACGGTTACGCAGGATAGATTCCTGAATCA 267
Query 37710 GTTTTTCTTCCCAGCTAGTACCCATACCAAAGGTTAAAGTCACAAAAGGTGTTTGACCGT 37769
| ||||||||| || |||| |||||| || || ||||| || || |||||||
Sbjct 266 GGCGCGATTCCCAGCTGGTGCCCAGACCAAAACCAAAGGTTACAAACGGCGTCTGACCGT 207
Query 37770 TGGTAGAGAACAAAGTGTTGATCTCATATTCCAACGCCTG 37809
||| | | || ||||| | || || |||| || |||
Sbjct 206 TGGCGGTGTGCAGGGTGTTTACTTCGTACTCCAGCGACTG 167
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 532381941321280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |