Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_012740.1 Length=166418 Score E Sequences producing significant alignments: (Bits) Value seq732 93.3 4e-14 >seq732 Length=24842 Score = 93.3 bits (102), Expect = 4e-14 Identities = 190/280 (68%), Gaps = 2/280 (1%) Strand=Plus/Minus Query 37531 ATCAGGGTAAAGACGCTTACTAGAACATTCCAATGCAAGTTGCTTAATGTCGTAGTTCGG 37590 ||| || || | ||||| || | || |||| || || || || |||||||||||||| Sbjct 445 ATCCGGATACATGCGCTTGCTTGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTTCGG 386 Query 37591 ATCTTCCGGTTTAAGGTTTAATCCTTCTTCTAAGAAC-ATCACCAGCTTAGGAAACACCG 37649 ||| | |||| |||| | || || | || | | |||||| || || ||||||| Sbjct 385 ATCGCCTTTTTTATGGTTCAGACCATC-GCGAATCGCAAACACCAGTTTCGGGAACACCG 327 Query 37650 GAGTTATACCGTCTTTACCTAAACCTTTAGTTCGAACTTTCAGGATCGCTTTCTGAATCA 37709 |||| ||| || |||||| | ||| | || |||||| | || |||||||| Sbjct 326 CAGTTTTACGGTTTTTACCGAGGCCTGCGATACGGTTACGCAGGATAGATTCCTGAATCA 267 Query 37710 GTTTTTCTTCCCAGCTAGTACCCATACCAAAGGTTAAAGTCACAAAAGGTGTTTGACCGT 37769 | ||||||||| || |||| |||||| || || ||||| || || ||||||| Sbjct 266 GGCGCGATTCCCAGCTGGTGCCCAGACCAAAACCAAAGGTTACAAACGGCGTCTGACCGT 207 Query 37770 TGGTAGAGAACAAAGTGTTGATCTCATATTCCAACGCCTG 37809 ||| | | || ||||| | || || |||| || ||| Sbjct 206 TGGCGGTGTGCAGGGTGTTTACTTCGTACTCCAGCGACTG 167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532381941321280