Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_012753.1 Length=37184 Score E Sequences producing significant alignments: (Bits) Value seq729 98.7 2e-16 >seq729 Length=25020 Score = 98.7 bits (108), Expect = 2e-16 Identities = 166/238 (70%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 3636 GCGGTTAACCGTAATTTTAAAGACGCTAACGGAGAA-CGTGAAACAGACTTTATCAATTG 3694 || || || |||||||||| || | || | ||| || || | || ||||||||||| Sbjct 1232 GCTGTGAATCGTAATTTTAC-GAATCAAAGCGGGAATCGCGAGGCGGATTTTATCAATTG 1174 Query 3695 CGTTATCTGGCGCCAGCAAGCTGAAAATTTGGCTAATTGGGCTAAAAAAGGCGCATTGAT 3754 || || ||||| | ||| |||| ||| ||||||| || ||||| | | | Sbjct 1173 TGTAATTTGGCGGAAATCAGCAGAAACTTTAGCTAATTATGCGCGCAAAGGAACTCTTTT 1114 Query 3755 TGGAATTACTGGACGCATCCAGACACGTAGCTATGAAAACCAACAGGGTCAACGAGTGTA 3814 || | ||||| || ||||| ||| | | |||||||| || || || ||||| || || Sbjct 1113 AGGTGTGACTGGCCGTATCCAAACAAGAAATTATGAAAATCAGCAAGGGCAACGTGTCTA 1054 Query 3815 TGTAACAGAGGTTGTCGCTGAAAATTTTCAAATGCTAGAAAGTCGTGCAGCTCGTGAA 3872 ||| ||||| ||||| ||||| ||||| ||| | | ||| |||| | || ||||| Sbjct 1053 TGTGACAGAAGTTGTTGCTGAGAATTTCCAATTATTGGAATCTCGTACTGCAAGTGAA 996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118861333606512