Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_012756.1
Length=31276
Score E
Sequences producing significant alignments: (Bits) Value
seq729 154 3e-33
>seq729
Length=25020
Score = 154 bits (170), Expect = 3e-33
Identities = 213/295 (72%), Gaps = 6/295 (2%)
Strand=Plus/Minus
Query 8338 TGTTGTTTTGGTAGGTCGCTTGACTCGTGATCCTGAGTTACGATACACACCGTCAAATGT 8397
|||||| | || ||||| || || |||||||| ||||| ||||| || ||||||
Sbjct 1314 TGTTGTACTAGTTGGTCGTTTAACAAAGGATCCTGATTTACGCTACAC--CG-CAAATGG 1258
Query 8398 GGC---TGTTGCGACTTTCAGTTTGGCAGTGAATCGCAATTTTAAGAATCAGGCAGGTGA 8454
| |||||| || || | ||| || |||||||| ||||||| |||||| || |
Sbjct 1257 TACAGGTGTTGCCACGTTTACTTTAGCTGTGAATCGTAATTTTACGAATCAAAGCGGGAA 1198
Query 8455 TCGTGAAGCTGATTTTATCAGTTGCATCATGTGGCGTCAACAGGCTGAAAACTTTGCAAA 8514
||| || || |||||||||| ||| | || ||||| || || |||| || || ||
Sbjct 1197 TCGCGAGGCGGATTTTATCAATTGTGTAATTTGGCGGAAATCAGCAGAAACTTTAGCTAA 1138
Query 8515 TTGGCTTAAAAAAGGTGCTCTTGTAGGAATCACAGGCCGCATCCAGACTCGTAGCTATGA 8574
|| ||||| ||||| |||| | || ||||| ||||| || | | |||||
Sbjct 1137 TTATGCGCGCAAAGGAACTCTTTTAGGTGTGACTGGCCGTATCCAAACAAGAAATTATGA 1078
Query 8575 TAATCAGCAAGGCCAACGTGTCTATGTGACAGAAGTGGTAGCTGAAAGTTTTCAA 8629
||||||||||| ||||||||||||||||||||||| || ||||| | ||| |||
Sbjct 1077 AAATCAGCAAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGAGAATTTCCAA 1023
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 99956666645136
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |