Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_012756.1 Length=31276 Score E Sequences producing significant alignments: (Bits) Value seq729 154 3e-33 >seq729 Length=25020 Score = 154 bits (170), Expect = 3e-33 Identities = 213/295 (72%), Gaps = 6/295 (2%) Strand=Plus/Minus Query 8338 TGTTGTTTTGGTAGGTCGCTTGACTCGTGATCCTGAGTTACGATACACACCGTCAAATGT 8397 |||||| | || ||||| || || |||||||| ||||| ||||| || |||||| Sbjct 1314 TGTTGTACTAGTTGGTCGTTTAACAAAGGATCCTGATTTACGCTACAC--CG-CAAATGG 1258 Query 8398 GGC---TGTTGCGACTTTCAGTTTGGCAGTGAATCGCAATTTTAAGAATCAGGCAGGTGA 8454 | |||||| || || | ||| || |||||||| ||||||| |||||| || | Sbjct 1257 TACAGGTGTTGCCACGTTTACTTTAGCTGTGAATCGTAATTTTACGAATCAAAGCGGGAA 1198 Query 8455 TCGTGAAGCTGATTTTATCAGTTGCATCATGTGGCGTCAACAGGCTGAAAACTTTGCAAA 8514 ||| || || |||||||||| ||| | || ||||| || || |||| || || || Sbjct 1197 TCGCGAGGCGGATTTTATCAATTGTGTAATTTGGCGGAAATCAGCAGAAACTTTAGCTAA 1138 Query 8515 TTGGCTTAAAAAAGGTGCTCTTGTAGGAATCACAGGCCGCATCCAGACTCGTAGCTATGA 8574 || ||||| ||||| |||| | || ||||| ||||| || | | ||||| Sbjct 1137 TTATGCGCGCAAAGGAACTCTTTTAGGTGTGACTGGCCGTATCCAAACAAGAAATTATGA 1078 Query 8575 TAATCAGCAAGGCCAACGTGTCTATGTGACAGAAGTGGTAGCTGAAAGTTTTCAA 8629 ||||||||||| ||||||||||||||||||||||| || ||||| | ||| ||| Sbjct 1077 AAATCAGCAAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGAGAATTTCCAA 1023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 99956666645136