Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_012884.1 Length=31147 Score E Sequences producing significant alignments: (Bits) Value seq729 149 1e-31 >seq729 Length=25020 Score = 149 bits (164), Expect = 1e-31 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 28493 TGCAACTTTTACGCTTGCGGTTAACCGTAATTTTAAAAATCAAAATGGTGAACGTGAAGC 28552 ||| || ||||| | || || || |||||||||| ||||||| || | || || || Sbjct 1248 TGCCACGTTTACTTTAGCTGTGAATCGTAATTTTACGAATCAAAGCGGGAATCGCGAGGC 1189 Query 28553 TGATTTCATTAATATCGTGATTTGGCGTCAGCAAGCTGAAAATTTAGCTAACTGGGCTAA 28612 ||||| || ||| || |||||||| | ||| |||| ||||||||| | || Sbjct 1188 GGATTTTATCAATTGTGTAATTTGGCGGAAATCAGCAGAAACTTTAGCTAATTATGCGCG 1129 Query 28613 AAAAGGGACTCTTTTAGGCATTACTGGTCGAATTCAGACCCGCAATTATGAAAACCAACA 28672 ||||| ||||||||||| | ||||| || || || || | ||||||||||| || || Sbjct 1128 CAAAGGAACTCTTTTAGGTGTGACTGGCCGTATCCAAACAAGAAATTATGAAAATCAGCA 1069 Query 28673 AGGTCAGCGTGTTTACGTCACAGAAGTTGTTGCGGATAATTTCCAAACTTTGGAA 28727 ||| || ||||| || || |||||||||||||| || ||||||||| |||||| Sbjct 1068 AGGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGAGAATTTCCAATTATTGGAA 1014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 99543887017848