Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_012884.1
Length=31147
Score E
Sequences producing significant alignments: (Bits) Value
seq729 149 1e-31
>seq729
Length=25020
Score = 149 bits (164), Expect = 1e-31
Identities = 174/235 (74%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 28493 TGCAACTTTTACGCTTGCGGTTAACCGTAATTTTAAAAATCAAAATGGTGAACGTGAAGC 28552
||| || ||||| | || || || |||||||||| ||||||| || | || || ||
Sbjct 1248 TGCCACGTTTACTTTAGCTGTGAATCGTAATTTTACGAATCAAAGCGGGAATCGCGAGGC 1189
Query 28553 TGATTTCATTAATATCGTGATTTGGCGTCAGCAAGCTGAAAATTTAGCTAACTGGGCTAA 28612
||||| || ||| || |||||||| | ||| |||| ||||||||| | ||
Sbjct 1188 GGATTTTATCAATTGTGTAATTTGGCGGAAATCAGCAGAAACTTTAGCTAATTATGCGCG 1129
Query 28613 AAAAGGGACTCTTTTAGGCATTACTGGTCGAATTCAGACCCGCAATTATGAAAACCAACA 28672
||||| ||||||||||| | ||||| || || || || | ||||||||||| || ||
Sbjct 1128 CAAAGGAACTCTTTTAGGTGTGACTGGCCGTATCCAAACAAGAAATTATGAAAATCAGCA 1069
Query 28673 AGGTCAGCGTGTTTACGTCACAGAAGTTGTTGCGGATAATTTCCAAACTTTGGAA 28727
||| || ||||| || || |||||||||||||| || ||||||||| ||||||
Sbjct 1068 AGGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGAGAATTTCCAATTATTGGAA 1014
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 99543887017848
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |