Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq199 96.9 4e-15
>seq199
Length=91904
Score = 96.9 bits (106), Expect = 4e-15
Identities = 183/267 (69%), Gaps = 2/267 (1%)
Strand=Plus/Minus
Query 175901 GTGAAGATGTACCTCGTTTGAGACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGA 175960
||||||||||| || | || || ||||| || || |||||||| || ||||||
Sbjct 70061 GTGAAGATGTATCTAGGGCTAGCCGAGTCTTTCCCGCCTTGCAGACGCGTGCCGAATTGA 70002
Query 175961 CCACATGGCTCAAGGAGATTGATATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACA 176020
||| ||| || || ||||||||||| || | | ||| | |||||| ||||||
Sbjct 70001 CCAATGGGCAACAGCAGGTTGATATTGTTGCTTCCGACAAAGTTGTGCGCCAAGTTGACA 69942
Query 176021 ATCGTATCC-GCGAGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCCACATACGC 176079
|||||| || | || || |||| |||||||| |||| ||| | || || || | |
Sbjct 69941 ATCGTAGCCATCAAGCTAG-CTTCGCCGTGATGATAGGAAGACATTTCGGCAACCGAACC 69883
Query 176080 CGCCAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATGAC 176139
|||| ||| || ||||| | || |||| ||| | |||||| | ||||| ||
Sbjct 69882 GGCCAGCTGAGCAACCTTGACTTCTCGCTTGTCGTTTCGCTTGAAGCAGGTATACAAAAC 69823
Query 176140 CTTTCTCTGTGAAGGCTTGAGGCCGTC 176166
||| | ||| |||||| | |||||
Sbjct 69822 CTTCCGCTGNCCAGGCTTCAAACCGTC 69796
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613475328300960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |