Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq199 96.9 4e-15 >seq199 Length=91904 Score = 96.9 bits (106), Expect = 4e-15 Identities = 183/267 (69%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 175901 GTGAAGATGTACCTCGTTTGAGACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGA 175960 ||||||||||| || | || || ||||| || || |||||||| || |||||| Sbjct 70061 GTGAAGATGTATCTAGGGCTAGCCGAGTCTTTCCCGCCTTGCAGACGCGTGCCGAATTGA 70002 Query 175961 CCACATGGCTCAAGGAGATTGATATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACA 176020 ||| ||| || || ||||||||||| || | | ||| | |||||| |||||| Sbjct 70001 CCAATGGGCAACAGCAGGTTGATATTGTTGCTTCCGACAAAGTTGTGCGCCAAGTTGACA 69942 Query 176021 ATCGTATCC-GCGAGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCCACATACGC 176079 |||||| || | || || |||| |||||||| |||| ||| | || || || | | Sbjct 69941 ATCGTAGCCATCAAGCTAG-CTTCGCCGTGATGATAGGAAGACATTTCGGCAACCGAACC 69883 Query 176080 CGCCAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATGAC 176139 |||| ||| || ||||| | || |||| ||| | |||||| | ||||| || Sbjct 69882 GGCCAGCTGAGCAACCTTGACTTCTCGCTTGTCGTTTCGCTTGAAGCAGGTATACAAAAC 69823 Query 176140 CTTTCTCTGTGAAGGCTTGAGGCCGTC 176166 ||| | ||| |||||| | ||||| Sbjct 69822 CTTCCGCTGNCCAGGCTTCAAACCGTC 69796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613475328300960