Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_013645.1 Length=34882 Score E Sequences producing significant alignments: (Bits) Value seq729 105 1e-18 >seq729 Length=25020 Score = 105 bits (116), Expect = 1e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 29287 GACTTTATCAATTGCGTTATCTGGAGACAGCAAGCTGAAAACTTGGCTAACTGGGCTAAG 29346 || ||||||||||| || || ||| | | ||| |||| || ||||| | || Sbjct 1187 GATTTTATCAATTGTGTAATTTGGCGGAAATCAGCAGAAACTTTAGCTAATTATGCGCGC 1128 Query 29347 AAAGGAGCATTGATTGGTATTACTGGACGTATTCAGACTCGTAGCTATGAAAATCAACAA 29406 |||||| | | | ||| | ||||| ||||| || || | | ||||||||||| ||| Sbjct 1127 AAAGGAACTCTTTTAGGTGTGACTGGCCGTATCCAAACAAGAAATTATGAAAATCAGCAA 1068 Query 29407 GGTCAACGTGTTTACGTGACTGAAGTTGTTGCTGAAAACTTCCAGATGTTGGAAAGTCGT 29466 || |||||||| || ||||| |||||||||||||| || ||||| | |||||| |||| Sbjct 1067 GGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGAGAATTTCCAATTATTGGAATCTCGT 1008 Query 29467 GCAGCGCGTGA 29477 | || |||| Sbjct 1007 ACTGCAAGTGA 997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 111495297156768