Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_013646.1
Length=38764
Score E
Sequences producing significant alignments: (Bits) Value
seq3588 100 7e-17
>seq3588
Length=1134
Score = 100 bits (110), Expect = 7e-17
Identities = 180/263 (68%), Gaps = 0/263 (0%)
Strand=Plus/Plus
Query 13970 AGAAGTAGATTTTCGACAAACAAAAGTGAATGCTAGAAATGTGTTGAAGAATTTTAGACG 14029
|||||| ||||| ||||| | | ||||| | || || |||| | | || |
Sbjct 654 AGAAGTTGATTTCAACCAAACTAGAAAAAATGCACGCAAAGTCTTGAGTACATACAGGAG 713
Query 14030 TTTAGAGCGAATAGCTGGTCGCTCTTTGATAGATTTAAAATCACCAATTATTACAGATAT 14089
|||||||||| || || || || | || ||| || || || | || || |||
Sbjct 714 ATTAGAGCGAACAGTCGGACGTTCATCTATTGATCTACGCTCTCCGTTAATAACGAGTAT 773
Query 14090 GCCTAAAAGCCAAAGTCATGGGAACAAATCAGAAGATGCGCTAGTACAATTAGCAGATGC 14149
||| ||| | || | || |||||| | ||||||||| ||||||| | |||||
Sbjct 774 GCCGAAATCACCTAGCTACGGAAACAAAGCCGAAGATGCGTTAGTACAGAGGGTGGATGC 833
Query 14150 AGAAGCAGAAAGAGATGCAATTTTATCTGCACTTATGGCTTTGAGTTTGACTAGTAGACA 14209
|||| |||||||||||| ||| | |||||| | ||| |||||| ||| |||||||||
Sbjct 834 AGAAAAAGAAAGAGATGCCATTGTTTCTGCATTGATGCGTTTGAGCCTGATTAGTAGACA 893
Query 14210 AATTCTGCACTACAGTTTTTGTG 14232
||| || | ||| |||||||
Sbjct 894 AATACTTTATTACTCATTTTGTG 916
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 123917084080272
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |