Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_013646.1 Length=38764 Score E Sequences producing significant alignments: (Bits) Value seq3588 100 7e-17 >seq3588 Length=1134 Score = 100 bits (110), Expect = 7e-17 Identities = 180/263 (68%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 13970 AGAAGTAGATTTTCGACAAACAAAAGTGAATGCTAGAAATGTGTTGAAGAATTTTAGACG 14029 |||||| ||||| ||||| | | ||||| | || || |||| | | || | Sbjct 654 AGAAGTTGATTTCAACCAAACTAGAAAAAATGCACGCAAAGTCTTGAGTACATACAGGAG 713 Query 14030 TTTAGAGCGAATAGCTGGTCGCTCTTTGATAGATTTAAAATCACCAATTATTACAGATAT 14089 |||||||||| || || || || | || ||| || || || | || || ||| Sbjct 714 ATTAGAGCGAACAGTCGGACGTTCATCTATTGATCTACGCTCTCCGTTAATAACGAGTAT 773 Query 14090 GCCTAAAAGCCAAAGTCATGGGAACAAATCAGAAGATGCGCTAGTACAATTAGCAGATGC 14149 ||| ||| | || | || |||||| | ||||||||| ||||||| | ||||| Sbjct 774 GCCGAAATCACCTAGCTACGGAAACAAAGCCGAAGATGCGTTAGTACAGAGGGTGGATGC 833 Query 14150 AGAAGCAGAAAGAGATGCAATTTTATCTGCACTTATGGCTTTGAGTTTGACTAGTAGACA 14209 |||| |||||||||||| ||| | |||||| | ||| |||||| ||| ||||||||| Sbjct 834 AGAAAAAGAAAGAGATGCCATTGTTTCTGCATTGATGCGTTTGAGCCTGATTAGTAGACA 893 Query 14210 AATTCTGCACTACAGTTTTTGTG 14232 ||| || | ||| ||||||| Sbjct 894 AATACTTTATTACTCATTTTGTG 916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123917084080272