Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq63 87.8 3e-12 >seq63 Length=178715 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 |||||| || ||||||| || | || ||| |||| ||| ||| | | ||||| ||| Sbjct 173558 CTGAAATTCGCCGGACAAAACTCTCCGCGTGTACAGATTGGATGTGTACGCTTCGATCGC 173499 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 ||||||||||| || || ||||| ||| || || ||||| ||||| | |||| || Sbjct 173498 TTCGTTGTTGCCCAATATTTGAGCTGTGGACGCAGTTGGCATAGGAGCAACAAGCAACGA 173439 Query 204316 GTTGCGCACACCGTAT 204331 ||||||||||| ||| Sbjct 173438 ATTGCGCACACCATAT 173423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795113891687360