Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq223 82.4 5e-11 >seq223 Length=82600 Score = 82.4 bits (90), Expect = 5e-11 Identities = 109/150 (73%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 39572 ATTGTTTC-CCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 |||| ||| || |||||||||| ||||||||||| | || | |||||||||||| | Sbjct 42343 ATTGATTCACCAGCAAAAATTAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGT 42402 Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690 |||||| ||||| | | | ||||||| ||||| || | || |||||||| Sbjct 42403 ATTTTTGTTTTAACGTTTTCAATGGTGTCTGACGGCTCCACTTCGAGGGTGATTGTTTTT 42462 Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || | ||||| ||||| || |||||| Sbjct 42463 CCAGTAAGCGTTTTAACGAATATTTGCATG 42492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347352005295548