Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq18 167 2e-36
seq223 91.5 1e-13
>seq18
Length=263653
Score = 167 bits (184), Expect = 2e-36
Identities = 262/371 (71%), Gaps = 12/371 (3%)
Strand=Plus/Minus
Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976
|||| || | ||| ||||| || ||||| ||||| | || |||||||| || ||||| |
Sbjct 150338 CCTCATCTCGGGAGATGAGCTCATTGCTAAAAGTGAGCCCTGGCATGAGACCACGTTTCT 150279
Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036
| ||||| || || | || || || || |||||||| | ||||||||||| || || |
Sbjct 150278 TTAGCCAGAAAATCGAAGCAAAGCTTCCAGAAAAGAATATACCCTCGACGGCGGCAAATG 150219
Query 133037 CCACCAGGCGCTCGCCGAA-CGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCG 133095
| || || || || | ||| ||| ||| |||| || ||||| || || ||||| |||
Sbjct 150218 CTACAAGTCGATCTCTGAATGGTGACTT-TTTGTCCGCTATCCATCGTAGAGCCCAATCG 150160
Query 133096 GCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACA---AACGGAGTTTCTCT 133152
||||| | || ||||| || || || || |||||||| |||| || ||| | ||
Sbjct 150159 GCCTTCTTCTTAACGCATGGAATGGTCTCAATGGCGTTGAACAGGTGGTGGCGTTCCGCT 150100
Query 133153 TCCGAGGAAC--GCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCT 133210
|| | | | | || ||||| || || |||||| |||||||| | ||||
Sbjct 150099 TC-----ATCTTGAATATACGTGTCAATCAGCAGACTATACATCTCCGAGTGAATATTCT 150045
Query 133211 CCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGA 133270
| || || ||||| |||||||||||||| || ||||| |||||| | ||| ||| |
Sbjct 150044 CTATAGCAATTTGGAAGCCGTAAAAGCAGCGAGCCTCTGTCACCTGAATTTCCCGAGAAA 149985
Query 133271 AACGCTCGACC 133281
| || || |||
Sbjct 149984 AGCGTTCAACC 149974
Score = 122 bits (134), Expect = 9e-23
Identities = 151/204 (74%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338
|||| ||||||| || || || ||| |||||||| || || || || | | ||||
Sbjct 149918 ACCAAATTTTCGAACACTATTCCATCGGAAGCGGCGAAGAAAGCGAGTACATACGAGATG 149859
Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398
|| || |||||| |||||| ||||||||| | |||| || ||||| |||
Sbjct 149858 AAGTGCTTCTCGTTCGCGTTCAGCTTTTCCCAGTCGGTCATGTCTCTGCTAAGGTCAACC 149799
Query 133399 TCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATA-CTCCACATGTCCGAATA 133457
||||| || |||||||| || ||||||||||||||||| ||| ||||| ||||||| |||
Sbjct 149798 TCCTCAACCGTCCAAAATGAAGCCTCGGCTTTTTTGTA-ATAGCTCCAAATGTCCGGATA 149740
Query 133458 TTGTATGGGAAAAATCACAAACCG 133481
||| | || || | |||||| ||
Sbjct 149739 TTGCAGAGGCAACAGCACAAAGCG 149716
Score = 96.9 bits (106), Expect = 3e-15
Identities = 167/243 (69%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650
||| ||||| | ||||| ||||||||||||||| | ||||| ||||| || || || ||
Sbjct 150714 CATTACGCCGCACTTTTGGTATTCGCCCACCTTTCTTTCAAAGAAATTGGTCTTACCTTC 150655
Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710
| || || | |||||| || || || || | | ||||| |||| || |
Sbjct 150654 AAGCGATATCATTTCCATAAAGTCGAACGGATTCTCAGCATTGTATATCTTGTCGCAGTC 150595
Query 132711 CAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATT 132770
|| || || | || | ||||||||| | || |||||||| |||| | |||||||
Sbjct 150594 CAACTCAACCAACAAACGATCGGCCACGTATTCTATGTATTGGCACATCAGTACGCAATT 150535
Query 132771 AAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGC 132830
| || | ||| || || || || ||||| || || |||||| |||||||||||
Sbjct 150534 CATGCCGATCAGGTTGACAGGAAGTGCCTCGGTAAGGAACTCTTGCTCAATGGCGACCGC 150475
Query 132831 GTC 132833
||
Sbjct 150474 CTC 150472
>seq223
Length=82600
Score = 91.5 bits (100), Expect = 1e-13
Identities = 102/134 (76%), Gaps = 2/134 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||||||||| |||||||| || || ||||| |||||| |||| || ||| | |
Sbjct 42491 ATGCAAATATTCGTTAAAACGCTTACTGGAAAAACAATCACCCTCGAAGTGGAGCCGTCA 42432
Query 38304 GACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | || ||||| ||||| |||||| | |||||||| || ||||| | || ||
Sbjct 42431 GACACCATTGAAAACG-TTAAAACAAAAATACAAGACAAAGAAGGCATTCCACCTGATCA 42373
Query 38363 ACAGCGGCTCATTT 38376
||||| | ||||
Sbjct 42372 GCAGCGATTAATTT 42359
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500146816023040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |