Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq18 167 2e-36 seq223 91.5 1e-13 >seq18 Length=263653 Score = 167 bits (184), Expect = 2e-36 Identities = 262/371 (71%), Gaps = 12/371 (3%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || | ||| ||||| || ||||| ||||| | || |||||||| || ||||| | Sbjct 150338 CCTCATCTCGGGAGATGAGCTCATTGCTAAAAGTGAGCCCTGGCATGAGACCACGTTTCT 150279 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || || | || || || || |||||||| | ||||||||||| || || | Sbjct 150278 TTAGCCAGAAAATCGAAGCAAAGCTTCCAGAAAAGAATATACCCTCGACGGCGGCAAATG 150219 Query 133037 CCACCAGGCGCTCGCCGAA-CGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCG 133095 | || || || || | ||| ||| ||| |||| || ||||| || || ||||| ||| Sbjct 150218 CTACAAGTCGATCTCTGAATGGTGACTT-TTTGTCCGCTATCCATCGTAGAGCCCAATCG 150160 Query 133096 GCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACA---AACGGAGTTTCTCT 133152 ||||| | || ||||| || || || || |||||||| |||| || ||| | || Sbjct 150159 GCCTTCTTCTTAACGCATGGAATGGTCTCAATGGCGTTGAACAGGTGGTGGCGTTCCGCT 150100 Query 133153 TCCGAGGAAC--GCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCT 133210 || | | | | || ||||| || || |||||| |||||||| | |||| Sbjct 150099 TC-----ATCTTGAATATACGTGTCAATCAGCAGACTATACATCTCCGAGTGAATATTCT 150045 Query 133211 CCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGA 133270 | || || ||||| |||||||||||||| || ||||| |||||| | ||| ||| | Sbjct 150044 CTATAGCAATTTGGAAGCCGTAAAAGCAGCGAGCCTCTGTCACCTGAATTTCCCGAGAAA 149985 Query 133271 AACGCTCGACC 133281 | || || ||| Sbjct 149984 AGCGTTCAACC 149974 Score = 122 bits (134), Expect = 9e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 |||| ||||||| || || || ||| |||||||| || || || || | | |||| Sbjct 149918 ACCAAATTTTCGAACACTATTCCATCGGAAGCGGCGAAGAAAGCGAGTACATACGAGATG 149859 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 || || |||||| |||||| ||||||||| | |||| || ||||| ||| Sbjct 149858 AAGTGCTTCTCGTTCGCGTTCAGCTTTTCCCAGTCGGTCATGTCTCTGCTAAGGTCAACC 149799 Query 133399 TCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATA-CTCCACATGTCCGAATA 133457 ||||| || |||||||| || ||||||||||||||||| ||| ||||| ||||||| ||| Sbjct 149798 TCCTCAACCGTCCAAAATGAAGCCTCGGCTTTTTTGTA-ATAGCTCCAAATGTCCGGATA 149740 Query 133458 TTGTATGGGAAAAATCACAAACCG 133481 ||| | || || | |||||| || Sbjct 149739 TTGCAGAGGCAACAGCACAAAGCG 149716 Score = 96.9 bits (106), Expect = 3e-15 Identities = 167/243 (69%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| ||||| | ||||| ||||||||||||||| | ||||| ||||| || || || || Sbjct 150714 CATTACGCCGCACTTTTGGTATTCGCCCACCTTTCTTTCAAAGAAATTGGTCTTACCTTC 150655 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 | || || | |||||| || || || || | | ||||| |||| || | Sbjct 150654 AAGCGATATCATTTCCATAAAGTCGAACGGATTCTCAGCATTGTATATCTTGTCGCAGTC 150595 Query 132711 CAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATT 132770 || || || | || | ||||||||| | || |||||||| |||| | ||||||| Sbjct 150594 CAACTCAACCAACAAACGATCGGCCACGTATTCTATGTATTGGCACATCAGTACGCAATT 150535 Query 132771 AAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGC 132830 | || | ||| || || || || ||||| || || |||||| ||||||||||| Sbjct 150534 CATGCCGATCAGGTTGACAGGAAGTGCCTCGGTAAGGAACTCTTGCTCAATGGCGACCGC 150475 Query 132831 GTC 132833 || Sbjct 150474 CTC 150472 >seq223 Length=82600 Score = 91.5 bits (100), Expect = 1e-13 Identities = 102/134 (76%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||||||||| |||||||| || || ||||| |||||| |||| || ||| | | Sbjct 42491 ATGCAAATATTCGTTAAAACGCTTACTGGAAAAACAATCACCCTCGAAGTGGAGCCGTCA 42432 Query 38304 GACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || ||||| ||||| |||||| | |||||||| || ||||| | || || Sbjct 42431 GACACCATTGAAAACG-TTAAAACAAAAATACAAGACAAAGAAGGCATTCCACCTGATCA 42373 Query 38363 ACAGCGGCTCATTT 38376 ||||| | |||| Sbjct 42372 GCAGCGATTAATTT 42359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500146816023040