Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_014036.1 Length=174436 Score E Sequences producing significant alignments: (Bits) Value seq732 129 7e-25 >seq732 Length=24842 Score = 129 bits (142), Expect = 7e-25 Identities = 462/717 (64%), Gaps = 39/717 (5%) Strand=Plus/Plus Query 153491 CGATGCGTTCCAGTCATACGAATATGAAGTAAACACCTTACATACTGCAAATGGACAGAC 153550 |||||| |||||||| || || |||||||||||| | || || || || || ||||| Sbjct 157 CGATGCCTTCCAGTCGCTGGAGTACGAAGTAAACACCCTGCACACCGCCAACGGTCAGAC 216 Query 153551 GCCTTTTGTCACGATCACTTTCGGTATGGGTACTGGTTGGCGCGAA---CGCATGATCCA 153607 ||| ||||| || | ||| ||| |||| || | ||| ||| ||| |||| || Sbjct 217 GCCGTTTGTAACCTTTGGTTTTGGTCTGGGCACCAGCTGG---GAATCGCGCCTGATTCA 273 Query 153608 GAAAGCAATTCTGAAAAACCGTATTCGTGGACTGGGTAAAAAAGGCATTACTCCTGTATT 153667 | || | || ||| |||||||| || || |||||||| | | ||| | || || Sbjct 274 GGAATCTATCCTGCGTAACCGTATCGCAGGCCTCGGTAAAAACCGTAAAACTGCGGTGTT 333 Query 153668 CCCAAAACTGGTTATGTTT---ATGGAAAAAGGGATTAACCTTAATCCGGAAGACAGAAA 153724 ||| ||||||| ||||| || | || | |||| ||| | || || Sbjct 334 CCCGAAACTGG---TGTTTGCGATTCGCGATGGTCTGAACCATAAAAAAGGCGATCCGAA 390 Query 153725 CTATGATATTAAGAAATTGGCCCTGGAATGTTCTTCAAAGCGTATGTATCCGGATATTAT 153784 ||| || || || | |||| ||||| || | ||||| |||||||||||||| | Sbjct 391 CTACGACATCAAACAGCTGGCGCTGGAGTGCGCAAGCAAGCGCATGTATCCGGATATCCT 450 Query 153785 TAGCGCGGCTAATAACCGTCGTA-TTACTGGCTCTAGCATTCCTGT--ATCTCCTATGGG 153841 | ||| | | | ||| | | | | | | ||| | | | | || ||||| Sbjct 451 GA-----ACTACGATCAG--GTAGTGAAAGTCACCGG--TTCGTTTAAAACCCCGATGGG 501 Query 153842 TTGTCGTAGTTTCCTTAGCGTGTGGAATGATGAGCACGGTAATGAAATTCTTGATGGACG 153901 || || || ||||| |||||||| | |||| |||| | | || | ||||| || Sbjct 502 CTGCCGCAGCTTCCTCGGCGTGTGGGAAAATGAAAACGGCGAGCAGATCCACGATGGTCG 561 Query 153902 TAATAACCTGGGCGTTGTGACAATCAACCTTCCTCGTATTGCGATTGAAGCCGAAGCACA 153961 ||| ||||| ||||| | | | ||||| || |||||||| | |||||| | Sbjct 562 TAACAACCTCGGCGTGATCAGCCTGAACCTGCCGCGTATTGCTCT------GGAAGCAAA 615 Query 153962 GGAAGATGAAGACGCGCATGATGCATTTTGGCGTATCCTTGATGAACGTCTGGAACTGTG 154021 | ||||||| | | || ||| | || ||||||||||||| ||| Sbjct 616 AGGCGATGAAGCC---------ACCTTCTGGAAGCTGCTGGATGAACGTCTGGTGCTGGC 666 Query 154022 CTTTGAAGCCCTGATGACTCGTATCGATAGCCTACGCGGTGTTAAAGCCAGTGTAGCCCC 154081 | | || |||||||| ||||||| | | || || || ||||| | || ||||| Sbjct 667 ACGTAAGGCGCTGATGACCCGTATCGCTCGTCTCGAAGGCGTGAAAGCGCGCGTGGCCCC 726 Query 154082 GATCCTTTATACAGAAGGTGCGTTTGGTGTAAGGTTGAAACCCGATGATGAAATTCTGGA 154141 |||||| |||| |||||||| | ||| || | | || | || ||||| || || Sbjct 727 GATCCTCTATATGGAAGGTGCTTGTGGCGTGCGTCTCAATGCTGACGATGATGTTTCTGA 786 Query 154142 ACTGTTCAAAAATGGACGCAGTTCTATCAGTCTGGGATACATCGGATTGCATGAAAC 154198 | | |||||||| || || ||||| ||||| |||||||| | || ||||| Sbjct 787 AATCTTCAAAAACGGTCGTGCGTCTATTTCGCTGGGTTACATCGGCATCCACGAAAC 843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558038208408960