Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_014036.1
Length=174436
Score E
Sequences producing significant alignments: (Bits) Value
seq732 129 7e-25
>seq732
Length=24842
Score = 129 bits (142), Expect = 7e-25
Identities = 462/717 (64%), Gaps = 39/717 (5%)
Strand=Plus/Plus
Query 153491 CGATGCGTTCCAGTCATACGAATATGAAGTAAACACCTTACATACTGCAAATGGACAGAC 153550
|||||| |||||||| || || |||||||||||| | || || || || || |||||
Sbjct 157 CGATGCCTTCCAGTCGCTGGAGTACGAAGTAAACACCCTGCACACCGCCAACGGTCAGAC 216
Query 153551 GCCTTTTGTCACGATCACTTTCGGTATGGGTACTGGTTGGCGCGAA---CGCATGATCCA 153607
||| ||||| || | ||| ||| |||| || | ||| ||| ||| |||| ||
Sbjct 217 GCCGTTTGTAACCTTTGGTTTTGGTCTGGGCACCAGCTGG---GAATCGCGCCTGATTCA 273
Query 153608 GAAAGCAATTCTGAAAAACCGTATTCGTGGACTGGGTAAAAAAGGCATTACTCCTGTATT 153667
| || | || ||| |||||||| || || |||||||| | | ||| | || ||
Sbjct 274 GGAATCTATCCTGCGTAACCGTATCGCAGGCCTCGGTAAAAACCGTAAAACTGCGGTGTT 333
Query 153668 CCCAAAACTGGTTATGTTT---ATGGAAAAAGGGATTAACCTTAATCCGGAAGACAGAAA 153724
||| ||||||| ||||| || | || | |||| ||| | || ||
Sbjct 334 CCCGAAACTGG---TGTTTGCGATTCGCGATGGTCTGAACCATAAAAAAGGCGATCCGAA 390
Query 153725 CTATGATATTAAGAAATTGGCCCTGGAATGTTCTTCAAAGCGTATGTATCCGGATATTAT 153784
||| || || || | |||| ||||| || | ||||| |||||||||||||| |
Sbjct 391 CTACGACATCAAACAGCTGGCGCTGGAGTGCGCAAGCAAGCGCATGTATCCGGATATCCT 450
Query 153785 TAGCGCGGCTAATAACCGTCGTA-TTACTGGCTCTAGCATTCCTGT--ATCTCCTATGGG 153841
| ||| | | | ||| | | | | | | ||| | | | | || |||||
Sbjct 451 GA-----ACTACGATCAG--GTAGTGAAAGTCACCGG--TTCGTTTAAAACCCCGATGGG 501
Query 153842 TTGTCGTAGTTTCCTTAGCGTGTGGAATGATGAGCACGGTAATGAAATTCTTGATGGACG 153901
|| || || ||||| |||||||| | |||| |||| | | || | ||||| ||
Sbjct 502 CTGCCGCAGCTTCCTCGGCGTGTGGGAAAATGAAAACGGCGAGCAGATCCACGATGGTCG 561
Query 153902 TAATAACCTGGGCGTTGTGACAATCAACCTTCCTCGTATTGCGATTGAAGCCGAAGCACA 153961
||| ||||| ||||| | | | ||||| || |||||||| | |||||| |
Sbjct 562 TAACAACCTCGGCGTGATCAGCCTGAACCTGCCGCGTATTGCTCT------GGAAGCAAA 615
Query 153962 GGAAGATGAAGACGCGCATGATGCATTTTGGCGTATCCTTGATGAACGTCTGGAACTGTG 154021
| ||||||| | | || ||| | || ||||||||||||| |||
Sbjct 616 AGGCGATGAAGCC---------ACCTTCTGGAAGCTGCTGGATGAACGTCTGGTGCTGGC 666
Query 154022 CTTTGAAGCCCTGATGACTCGTATCGATAGCCTACGCGGTGTTAAAGCCAGTGTAGCCCC 154081
| | || |||||||| ||||||| | | || || || ||||| | || |||||
Sbjct 667 ACGTAAGGCGCTGATGACCCGTATCGCTCGTCTCGAAGGCGTGAAAGCGCGCGTGGCCCC 726
Query 154082 GATCCTTTATACAGAAGGTGCGTTTGGTGTAAGGTTGAAACCCGATGATGAAATTCTGGA 154141
|||||| |||| |||||||| | ||| || | | || | || ||||| || ||
Sbjct 727 GATCCTCTATATGGAAGGTGCTTGTGGCGTGCGTCTCAATGCTGACGATGATGTTTCTGA 786
Query 154142 ACTGTTCAAAAATGGACGCAGTTCTATCAGTCTGGGATACATCGGATTGCATGAAAC 154198
| | |||||||| || || ||||| ||||| |||||||| | || |||||
Sbjct 787 AATCTTCAAAAACGGTCGTGCGTCTATTTCGCTGGGTTACATCGGCATCCACGAAAC 843
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 558038208408960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |