Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_014636.1
Length=225268
Score E
Sequences producing significant alignments: (Bits) Value
seq732 196 7e-45
seq1870 91.5 2e-13
seq1599 84.2 3e-11
>seq732
Length=24842
Score = 196 bits (216), Expect = 7e-45
Identities = 433/644 (67%), Gaps = 4/644 (1%)
Strand=Plus/Minus
Query 123875 AACAGATGCGCGACCATTTTCAAATGCTTTCATGATG-TCATCATTTGGTTTCAGACGAA 123933
|| ||| || ||||| |||| || | ||||| | ||||| | | || ||||| |
Sbjct 814 AATAGACGCACGACCGTTTTTGAA-GATTTCAGAAACATCATCGTCAGCATTGAGACGCA 756
Query 123934 CACCACAAGCACCTTCAACATAAAGAATCGGAGCAACGCTTGCCTTGACACCACGCAGAC 123993
| |||||||||||||| | ||| || ||||| || |||| || || || || ||||
Sbjct 755 CGCCACAAGCACCTTCCATATAGAGGATCGGGGCCACGCGCGCTTTCACGCCTTCGAGAC 696
Query 123994 GATCAACGCGAGTCAACAAAGCTTTCTTAACGATTTCCATACGCTCTTCCAGAATTTCAA 124053
|| | | || |||| || || || | | ||| ||| || ||||| | |
Sbjct 695 GAGCGATACGGGTCATCAGCGCCTTACGTGCCAGCACCAGACGTTCATCCAGCAGCTTCC 636
Query 124054 AGAAGCGCATTTGATTGCCGTTTGCGTCGAGTGCGATACGCGGCAAGTTCAGAGTAACAA 124113
||||| || || ||| ||||| || || || |||||||||| |||||| | | |
Sbjct 635 AGAAGGTGGCTTCATCGCCTTTTGCTTCCAGAGCAATACGCGGCAGGTTCAGGCTGATCA 576
Query 124114 CACCGAGATTGTTTCTGCCTTCATGAACTTCATTACCGGTTTCGTCTTCCCAG-CGATGC 124172
| ||||| ||||| | || || || | | | ||| |||| | |||||| || |
Sbjct 575 CGCCGAGGTTGTTACGACCATCGTGGATCTGCTCGCCGTTTTCATTTTCCCACACGCCG- 517
Query 124173 AAGAAACTACGGCATCCCATAGGGAACTTAAAGCTACCAGTCACTTCTACCACTTTATCA 124232
| ||| || ||||| ||||| ||| ||||| ||| || |||| || || | |||
Sbjct 516 AGGAAGCTGCGGCAGCCCATCGGGGTTTTAAACGAACCGGTGACTTTCACTACCTGATCG 457
Query 124233 TAACTCAAGATGTCTGGATACATACGCTTGGCAGCGCACTCCAGTGCCATCTGTTTGATA 124292
|| ||| ||| || |||||||| |||||| ||||||||||| |||| |||||||||
Sbjct 456 TAGTTCAGGATATCCGGATACATGCGCTTGCTTGCGCACTCCAGCGCCAGCTGTTTGATG 397
Query 124293 CGATACAGAGGATCAGTTGGTTTCAAGTTGTGTCCGTCTTTCAGCGCGAAAACAAGTTTC 124352
|| ||||| | ||| ||| | || || | ||| || || ||||||
Sbjct 396 TCGTAGTTCGGATCGCCTTTTTTATGGTTCAGACCATCGCGAATCGCAAACACCAGTTTC 337
Query 124353 GGGAAAACGGGAGTAATACCTTCTTTGCCAAGACCTTTCATCCGAACTTTCAGAATTGCT 124412
||||| || | ||| ||| | ||| || || ||| || || ||| || | |
Sbjct 336 GGGAACACCGCAGTTTTACGGTTTTTACCGAGGCCTGCGATACGGTTACGCAGGATAGAT 277
Query 124413 TCCTGAATGAGTTCGGATTCCCAGCTAGTGCCTAGTCCAAACCCGAAAGTGCAGAATGGA 124472
|||||||| || ||||||||||| ||||| || ||||| || || || || ||
Sbjct 276 TCCTGAATCAGGCGCGATTCCCAGCTGGTGCCCAGACCAAAACCAAAGGTTACAAACGGC 217
Query 124473 GTTTGACCATTTGCCGAGTGCAGAGTGTTTACCTCATACTCTAG 124516
|| ||||| || || | |||||| |||||||| || ||||| ||
Sbjct 216 GTCTGACCGTTGGCGGTGTGCAGGGTGTTTACTTCGTACTCCAG 173
Score = 161 bits (178), Expect = 1e-34
Identities = 291/419 (69%), Gaps = 10/419 (2%)
Strand=Plus/Minus
Query 123218 CATATGTTTGACACGACGCTGGACTTCGTCCTGTTTGCCGACGTTAAATGCGCGAG-ATC 123276
|| |||||| || || |||| ||||| ||||| || ||| ||||||||| || | |||
Sbjct 1471 CAAATGTTTAACGCGGCGCTTAACTTCTTCCTGCTTACCGGCGTTAAATGGACGTGCATC 1412
Query 123277 CAGGGTTACCCAAATACCCACAGACGCGACGAATAACGTTCATCTTACGGT---CATCGT 123333
| ||| |||| ||||| || || ||||| ||| | || || |||| | || |
Sbjct 1411 C-GGGCTACCTAAATATCCGCACACGCGGCGAGTCACCGACAC---ACGGGAGGCGTCAT 1356
Query 123334 GATTGCCACACTTCGGACATTCGTATCCTTTAGAAGTAGCGGTA-AACTCACCGTTAAAT 123392
| || ||||| ||||| || | | ||||| || || | ||||||||| ||||
Sbjct 1355 GGTTACCACATTTCGGGCAAGTGAAGCCTTTGCTGGT-GCACTCGAACTCACCGGTAAAG 1297
Query 123393 CCACATTCAAAACAAACATCAACTGGAGTGTTTGTTCCATAGTACGGAGTGTTCCGATAA 123452
||||| || | || |||||| || || || || || || ||||| | | ||||
Sbjct 1296 CCACACTCGTAGCACTCATCAATCGGTGTATTGGTGCCGTAATACGGTACATGCTGATAG 1237
Query 123453 GCATAATCCCAAACTGCTTCGAGTGCTTCCAGATTGTGTTTCATATTCGGATATTCACCG 123512
|||||||| || |||| || || | ||| ||||| | || || ||||| || |||
Sbjct 1236 CTGTAATCCCAGACATCTTCCAGCGCCTTCAGGTTGTGCTGAATGTTTGGATACTCGCCG 1177
Query 123513 TATGAAATGAAACCACCGGTACTAAGCGGAATGAATTGCTTTTCAAAATCGATCTTGTCA 123572
|| |||||||||||||| | ||||| | | || |||||| |||||||||||
Sbjct 1176 TAGCAAATGAAACCACCGTTCGCCAGCGGCGGGTAAGGCGCTTCAAAGTCGATCTTGTCG 1117
Query 123573 TACGGATTTGTGTTCATATCCACAGACAGATGGAAGCTGTTTGTGTAATAGTCTTTATC 123631
||||| || ||| | |||||| || ||||| ||||| ||||| || |||||||
Sbjct 1116 TACGGGTTCACCTTCTTCTCCACATCGAGGTGGAAACTGTTGGTGTAGTAACCTTTATC 1058
>seq1870
Length=4832
Score = 91.5 bits (100), Expect = 2e-13
Identities = 70/82 (85%), Gaps = 1/82 (1%)
Strand=Plus/Plus
Query 189966 TGCGGATGGTCGGACTCGAACCGACACGCC-TATGGCGCTAGAACCTAAATCTAGTGCGT 190024
||||| || ||||| ||||| |||||| || ||||||||| ||||||||||||||||
Sbjct 599 TGCGGGTGAAGGGACTTGAACCCCCACGCCGTAAGGCGCTAGATCCTAAATCTAGTGCGT 658
Query 190025 CTGCCAATTTCGCCACATCCGC 190046
||||||||| ||||||| ||||
Sbjct 659 CTGCCAATTCCGCCACACCCGC 680
Score = 87.8 bits (96), Expect = 3e-12
Identities = 62/71 (87%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 191865 TGCGCCGTGATGGACTCGAACCATCGACCCTCGGATTAAAAGTCCGATGCTCTACCAACT 191924
|| ||||| ||| ||||||||| ||||||| ||||||||||| |||||||||||||||
Sbjct 690 TGAGCCGTACTGGGCTCGAACCAGTGACCCTCTGATTAAAAGTCAGATGCTCTACCAACT 749
Query 191925 AAGCTAACGGC 191935
||||||||||
Sbjct 750 GAGCTAACGGC 760
>seq1599
Length=6876
Score = 84.2 bits (92), Expect = 3e-11
Identities = 106/143 (74%), Gaps = 7/143 (5%)
Strand=Plus/Minus
Query 192942 GAATCGAACCCACGACGTCTGCTTGGAAGGCAGTGGTTTTACCATTAAACTAAGAAGGCA 193001
||||||||| | |||| | ||||||||||| || ||||||||| ||||||| |||
Sbjct 6545 GAATCGAACTCGCGACAACAGCTTGGAAGGCTGTAGTTTTACCACTAAACTACACCCGCA 6486
Query 193002 GTTTTAAATTTGGT----GGAGACAATGGGACTCGAACCCACGACCCCCAGCTTGCAAGG 193057
| |||| || | |||| || |||| ||||||| ||||| | ||||| ||||
Sbjct 6485 --TATAAAGTTCTTAATGGGAGTTAACGGGA-TCGAACCGCTGACCCTCTGCTTGTAAGG 6429
Query 193058 CTAGTGCTCTCCCAACTGAGCTA 193080
| |||||||||| ||||||||
Sbjct 6428 CAGATGCTCTCCCAGCTGAGCTA 6406
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 720692158097280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |