Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_014636.1 Length=225268 Score E Sequences producing significant alignments: (Bits) Value seq732 196 7e-45 seq1870 91.5 2e-13 seq1599 84.2 3e-11 >seq732 Length=24842 Score = 196 bits (216), Expect = 7e-45 Identities = 433/644 (67%), Gaps = 4/644 (1%) Strand=Plus/Minus Query 123875 AACAGATGCGCGACCATTTTCAAATGCTTTCATGATG-TCATCATTTGGTTTCAGACGAA 123933 || ||| || ||||| |||| || | ||||| | ||||| | | || ||||| | Sbjct 814 AATAGACGCACGACCGTTTTTGAA-GATTTCAGAAACATCATCGTCAGCATTGAGACGCA 756 Query 123934 CACCACAAGCACCTTCAACATAAAGAATCGGAGCAACGCTTGCCTTGACACCACGCAGAC 123993 | |||||||||||||| | ||| || ||||| || |||| || || || || |||| Sbjct 755 CGCCACAAGCACCTTCCATATAGAGGATCGGGGCCACGCGCGCTTTCACGCCTTCGAGAC 696 Query 123994 GATCAACGCGAGTCAACAAAGCTTTCTTAACGATTTCCATACGCTCTTCCAGAATTTCAA 124053 || | | || |||| || || || | | ||| ||| || ||||| | | Sbjct 695 GAGCGATACGGGTCATCAGCGCCTTACGTGCCAGCACCAGACGTTCATCCAGCAGCTTCC 636 Query 124054 AGAAGCGCATTTGATTGCCGTTTGCGTCGAGTGCGATACGCGGCAAGTTCAGAGTAACAA 124113 ||||| || || ||| ||||| || || || |||||||||| |||||| | | | Sbjct 635 AGAAGGTGGCTTCATCGCCTTTTGCTTCCAGAGCAATACGCGGCAGGTTCAGGCTGATCA 576 Query 124114 CACCGAGATTGTTTCTGCCTTCATGAACTTCATTACCGGTTTCGTCTTCCCAG-CGATGC 124172 | ||||| ||||| | || || || | | | ||| |||| | |||||| || | Sbjct 575 CGCCGAGGTTGTTACGACCATCGTGGATCTGCTCGCCGTTTTCATTTTCCCACACGCCG- 517 Query 124173 AAGAAACTACGGCATCCCATAGGGAACTTAAAGCTACCAGTCACTTCTACCACTTTATCA 124232 | ||| || ||||| ||||| ||| ||||| ||| || |||| || || | ||| Sbjct 516 AGGAAGCTGCGGCAGCCCATCGGGGTTTTAAACGAACCGGTGACTTTCACTACCTGATCG 457 Query 124233 TAACTCAAGATGTCTGGATACATACGCTTGGCAGCGCACTCCAGTGCCATCTGTTTGATA 124292 || ||| ||| || |||||||| |||||| ||||||||||| |||| ||||||||| Sbjct 456 TAGTTCAGGATATCCGGATACATGCGCTTGCTTGCGCACTCCAGCGCCAGCTGTTTGATG 397 Query 124293 CGATACAGAGGATCAGTTGGTTTCAAGTTGTGTCCGTCTTTCAGCGCGAAAACAAGTTTC 124352 || ||||| | ||| ||| | || || | ||| || || |||||| Sbjct 396 TCGTAGTTCGGATCGCCTTTTTTATGGTTCAGACCATCGCGAATCGCAAACACCAGTTTC 337 Query 124353 GGGAAAACGGGAGTAATACCTTCTTTGCCAAGACCTTTCATCCGAACTTTCAGAATTGCT 124412 ||||| || | ||| ||| | ||| || || ||| || || ||| || | | Sbjct 336 GGGAACACCGCAGTTTTACGGTTTTTACCGAGGCCTGCGATACGGTTACGCAGGATAGAT 277 Query 124413 TCCTGAATGAGTTCGGATTCCCAGCTAGTGCCTAGTCCAAACCCGAAAGTGCAGAATGGA 124472 |||||||| || ||||||||||| ||||| || ||||| || || || || || Sbjct 276 TCCTGAATCAGGCGCGATTCCCAGCTGGTGCCCAGACCAAAACCAAAGGTTACAAACGGC 217 Query 124473 GTTTGACCATTTGCCGAGTGCAGAGTGTTTACCTCATACTCTAG 124516 || ||||| || || | |||||| |||||||| || ||||| || Sbjct 216 GTCTGACCGTTGGCGGTGTGCAGGGTGTTTACTTCGTACTCCAG 173 Score = 161 bits (178), Expect = 1e-34 Identities = 291/419 (69%), Gaps = 10/419 (2%) Strand=Plus/Minus Query 123218 CATATGTTTGACACGACGCTGGACTTCGTCCTGTTTGCCGACGTTAAATGCGCGAG-ATC 123276 || |||||| || || |||| ||||| ||||| || ||| ||||||||| || | ||| Sbjct 1471 CAAATGTTTAACGCGGCGCTTAACTTCTTCCTGCTTACCGGCGTTAAATGGACGTGCATC 1412 Query 123277 CAGGGTTACCCAAATACCCACAGACGCGACGAATAACGTTCATCTTACGGT---CATCGT 123333 | ||| |||| ||||| || || ||||| ||| | || || |||| | || | Sbjct 1411 C-GGGCTACCTAAATATCCGCACACGCGGCGAGTCACCGACAC---ACGGGAGGCGTCAT 1356 Query 123334 GATTGCCACACTTCGGACATTCGTATCCTTTAGAAGTAGCGGTA-AACTCACCGTTAAAT 123392 | || ||||| ||||| || | | ||||| || || | ||||||||| |||| Sbjct 1355 GGTTACCACATTTCGGGCAAGTGAAGCCTTTGCTGGT-GCACTCGAACTCACCGGTAAAG 1297 Query 123393 CCACATTCAAAACAAACATCAACTGGAGTGTTTGTTCCATAGTACGGAGTGTTCCGATAA 123452 ||||| || | || |||||| || || || || || || ||||| | | |||| Sbjct 1296 CCACACTCGTAGCACTCATCAATCGGTGTATTGGTGCCGTAATACGGTACATGCTGATAG 1237 Query 123453 GCATAATCCCAAACTGCTTCGAGTGCTTCCAGATTGTGTTTCATATTCGGATATTCACCG 123512 |||||||| || |||| || || | ||| ||||| | || || ||||| || ||| Sbjct 1236 CTGTAATCCCAGACATCTTCCAGCGCCTTCAGGTTGTGCTGAATGTTTGGATACTCGCCG 1177 Query 123513 TATGAAATGAAACCACCGGTACTAAGCGGAATGAATTGCTTTTCAAAATCGATCTTGTCA 123572 || |||||||||||||| | ||||| | | || |||||| ||||||||||| Sbjct 1176 TAGCAAATGAAACCACCGTTCGCCAGCGGCGGGTAAGGCGCTTCAAAGTCGATCTTGTCG 1117 Query 123573 TACGGATTTGTGTTCATATCCACAGACAGATGGAAGCTGTTTGTGTAATAGTCTTTATC 123631 ||||| || ||| | |||||| || ||||| ||||| ||||| || ||||||| Sbjct 1116 TACGGGTTCACCTTCTTCTCCACATCGAGGTGGAAACTGTTGGTGTAGTAACCTTTATC 1058 >seq1870 Length=4832 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 189966 TGCGGATGGTCGGACTCGAACCGACACGCC-TATGGCGCTAGAACCTAAATCTAGTGCGT 190024 ||||| || ||||| ||||| |||||| || ||||||||| |||||||||||||||| Sbjct 599 TGCGGGTGAAGGGACTTGAACCCCCACGCCGTAAGGCGCTAGATCCTAAATCTAGTGCGT 658 Query 190025 CTGCCAATTTCGCCACATCCGC 190046 ||||||||| ||||||| |||| Sbjct 659 CTGCCAATTCCGCCACACCCGC 680 Score = 87.8 bits (96), Expect = 3e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 191865 TGCGCCGTGATGGACTCGAACCATCGACCCTCGGATTAAAAGTCCGATGCTCTACCAACT 191924 || ||||| ||| ||||||||| ||||||| ||||||||||| ||||||||||||||| Sbjct 690 TGAGCCGTACTGGGCTCGAACCAGTGACCCTCTGATTAAAAGTCAGATGCTCTACCAACT 749 Query 191925 AAGCTAACGGC 191935 |||||||||| Sbjct 750 GAGCTAACGGC 760 >seq1599 Length=6876 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/143 (74%), Gaps = 7/143 (5%) Strand=Plus/Minus Query 192942 GAATCGAACCCACGACGTCTGCTTGGAAGGCAGTGGTTTTACCATTAAACTAAGAAGGCA 193001 ||||||||| | |||| | ||||||||||| || ||||||||| ||||||| ||| Sbjct 6545 GAATCGAACTCGCGACAACAGCTTGGAAGGCTGTAGTTTTACCACTAAACTACACCCGCA 6486 Query 193002 GTTTTAAATTTGGT----GGAGACAATGGGACTCGAACCCACGACCCCCAGCTTGCAAGG 193057 | |||| || | |||| || |||| ||||||| ||||| | ||||| |||| Sbjct 6485 --TATAAAGTTCTTAATGGGAGTTAACGGGA-TCGAACCGCTGACCCTCTGCTTGTAAGG 6429 Query 193058 CTAGTGCTCTCCCAACTGAGCTA 193080 | |||||||||| |||||||| Sbjct 6428 CAGATGCTCTCCCAGCTGAGCTA 6406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 720692158097280