Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq195 152 2e-31 seq223 120 1e-21 seq265 111 6e-19 >seq195 Length=92702 Score = 152 bits (168), Expect = 2e-31 Identities = 277/405 (68%), Gaps = 3/405 (1%) Strand=Plus/Minus Query 451192 AGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGA 451251 ||| ||||| | ||||| || | || ||||| || || || | ||| |||| ||||| Sbjct 11713 AGGCAAGCCAAAGATTCAGGTGGAATACAAAGGCGAGACGAAGATGTTTACTCCCGAAGA 11654 Query 451252 AATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCC 451311 | | ||||||| ||| |||||||| || || || ||| ||| | || | Sbjct 11653 AGTCAGCGCTATGGTGCTTGTGAAAATGAAGGAGACGGCGGAAGCTTATTTGGGCAAAAC 11594 Query 451312 AGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371 || | ||||| || || |||||||| || || ||||||||| | || |||| ||||| Sbjct 11593 CGTGAAGGATGCCGTCATCACTGTTCCGGCATACTTCAATGATTCTCAGAGGCAGGCAAC 11534 Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431 ||||| || || ||| |||| || ||||| ||||||||||| || ||||| || || Sbjct 11533 GAAAGACGCCGGTACCATTTCTGGATTGAATGTCCTTCGAATTATCAACGAACCAACTGC 11474 Query 451432 AGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGT 451491 ||||| | || || || || | || |||| || | |||| |||| | | | Sbjct 11473 TGCTGCAATCGCTTACGGCCTTGACAA---GAAAGGTACTGGAGAACGAAATGTGCTCAT 11417 Query 451492 ATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATT 451551 || ||| | || || || || ||| || | | ||||||| ||||| |||| Sbjct 11416 TTTCGATCTGGGCGGCGGTACCTTCGATGTGTCCATTTTGACAATTGAGGATGGTATATT 11357 Query 451552 TGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 |||||||||| | || || ||||||||||| || |||||||| Sbjct 11356 TGAAGTAAAGTCTACGGCAGGCGATACTCATCTTGGCGGTGAAGA 11312 >seq223 Length=82600 Score = 120 bits (132), Expect = 1e-21 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||| ||||| || || || ||||| ||||| ||||| ||||| | || Sbjct 43917 AATGCAGATTTTCGTGAAAACGCTCACGGGAAAAACCATTACGCTTGAAGTTGAGCCGTC 43858 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| |||||| | | || | |||||||||||||||||||| |||||||| ||||| Sbjct 43857 TGACTCAATTGAAAATGTGAAGAATAAAATTCAAGATAAGGAAGGCATTCCTCCGGATCA 43798 Query 391169 ACAACGTTTAATTTTCTCAGG 391189 ||| ||| |||| ||| |||| Sbjct 43797 ACAGCGTCTAATCTTCGCAGG 43777 Score = 98.7 bits (108), Expect = 4e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||||||||| || ||||| ||||| || || || || || || | || Sbjct 42491 ATGCAAATATTCGTTAAAACGCTTACTGGAAAAACAATCACCCTCGAAGTGGAGCCGTCA 42432 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||||| ||||| |||||| ||||| || ||||| ||||| |||||||| Sbjct 42431 GACACCATTGAAAACGTTAAAACAAAAATACAAGACAAAGAAGGCATTCCACCTGATCAG 42372 Query 391170 CAACGTTTAATTTT 391183 || || |||||||| Sbjct 42371 CAGCGATTAATTTT 42358 Score = 95.1 bits (104), Expect = 5e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| || ||||| | || || ||||| || || || || || || | || Sbjct 42208 AATGCAAATTTTTGTGAAAACTTTAACCGGAAAAACAATAACGCTGGAAGTGGAGCCGTC 42149 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | |||||| | ||| |||||||| ||||||||||| ||||| |||||||| Sbjct 42148 GGACACTATTGAAAACGTGAAAGCCAAAATTCAGGATAAGGAAGGTATTCCACCTGATCA 42089 Query 391169 ACAACGTTTAATTTT 391183 ||||||||||||||| Sbjct 42088 ACAACGTTTAATTTT 42074 Score = 89.7 bits (98), Expect = 2e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || ||||| || || || ||||||||||| || || ||||| | || Sbjct 43339 ATGCAGATATTTGTGAAAACGCTAACCGGCAAAACTATTACGCTGGAAGTTGAGCCGTCC 43280 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | || ||||||||||||||||||||||| ||||| ||||| Sbjct 43279 GATACCATTGATAACGTGAAGACGAAAATTCAAGATAAGGAAGGAATCCCTCCAGATCAG 43220 Query 391170 CAACGTTTAATTTT 391183 || || |||| || Sbjct 43219 CAGCGACTAATCTT 43206 Score = 84.2 bits (92), Expect = 9e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| ||||| || ||||| || || ||||| || || || ||| | || Sbjct 42773 ATGCAGATATTCGTGAAAACTCTAACTGGCAAGACAATTACGCTGGAAGTGGAACCTTCG 42714 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | | || ||||| ||||| || ||||| ||||| ||||||||| Sbjct 42713 GATACTATTGAAAATGTAAAGACTAAAATACAAGACAAAGAAGGTATTCCGCCTGATCAA 42654 Query 391170 CAACGTTTAATTTT 391183 || || |||| || Sbjct 42653 CAGCGACTAATCTT 42640 >seq265 Length=70602 Score = 111 bits (122), Expect = 6e-19 Identities = 151/207 (73%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 451220 AAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATG 451279 ||||| |||| || ||||| | || ||||| || || ||||||| | || |||||| Sbjct 25672 AAAGGAGAAA--AAGACTTTCTCGCCAGAAGAGATATCGGCTATGGTATTGACGAAAATG 25729 Query 451280 AAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCC 451339 |||||||| ||||| ||| |||| || || | || || |||| || ||| Sbjct 25730 AAAGAAACGGCAGAGGCGTATCTTGGCAAAAAGGTCACACACGCTGTGGTTACGGTGCCC 25789 Query 451340 GCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGG-ACATATTGCTGGTTT 451398 || |||||||||||||| || || || ||||| || || ||||| ||| || |||||| | Sbjct 25790 GCCTATTTCAATGATGCCCAGCGACAGGCAACAAAGGACGCAGGTACA-ATCGCTGGTCT 25848 Query 451399 AAATGTTCTTCGAATTATTAATGAACC 451425 || |||||||| || || || ||||| Sbjct 25849 AACCGTTCTTCGGATCATCAACGAACC 25875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975613195464848