Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq195 152 2e-31
seq223 120 1e-21
seq265 111 6e-19
>seq195
Length=92702
Score = 152 bits (168), Expect = 2e-31
Identities = 277/405 (68%), Gaps = 3/405 (1%)
Strand=Plus/Minus
Query 451192 AGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGA 451251
||| ||||| | ||||| || | || ||||| || || || | ||| |||| |||||
Sbjct 11713 AGGCAAGCCAAAGATTCAGGTGGAATACAAAGGCGAGACGAAGATGTTTACTCCCGAAGA 11654
Query 451252 AATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCC 451311
| | ||||||| ||| |||||||| || || || ||| ||| | || |
Sbjct 11653 AGTCAGCGCTATGGTGCTTGTGAAAATGAAGGAGACGGCGGAAGCTTATTTGGGCAAAAC 11594
Query 451312 AGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371
|| | ||||| || || |||||||| || || ||||||||| | || |||| |||||
Sbjct 11593 CGTGAAGGATGCCGTCATCACTGTTCCGGCATACTTCAATGATTCTCAGAGGCAGGCAAC 11534
Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431
||||| || || ||| |||| || ||||| ||||||||||| || ||||| || ||
Sbjct 11533 GAAAGACGCCGGTACCATTTCTGGATTGAATGTCCTTCGAATTATCAACGAACCAACTGC 11474
Query 451432 AGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGT 451491
||||| | || || || || | || |||| || | |||| |||| | | |
Sbjct 11473 TGCTGCAATCGCTTACGGCCTTGACAA---GAAAGGTACTGGAGAACGAAATGTGCTCAT 11417
Query 451492 ATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATT 451551
|| ||| | || || || || ||| || | | ||||||| ||||| ||||
Sbjct 11416 TTTCGATCTGGGCGGCGGTACCTTCGATGTGTCCATTTTGACAATTGAGGATGGTATATT 11357
Query 451552 TGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596
|||||||||| | || || ||||||||||| || ||||||||
Sbjct 11356 TGAAGTAAAGTCTACGGCAGGCGATACTCATCTTGGCGGTGAAGA 11312
>seq223
Length=82600
Score = 120 bits (132), Expect = 1e-21
Identities = 111/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | |||||||| ||||| || || || ||||| ||||| ||||| ||||| | ||
Sbjct 43917 AATGCAGATTTTCGTGAAAACGCTCACGGGAAAAACCATTACGCTTGAAGTTGAGCCGTC 43858
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||| |||||| | | || | |||||||||||||||||||| |||||||| |||||
Sbjct 43857 TGACTCAATTGAAAATGTGAAGAATAAAATTCAAGATAAGGAAGGCATTCCTCCGGATCA 43798
Query 391169 ACAACGTTTAATTTTCTCAGG 391189
||| ||| |||| ||| ||||
Sbjct 43797 ACAGCGTCTAATCTTCGCAGG 43777
Score = 98.7 bits (108), Expect = 4e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || ||||||||||| || ||||| ||||| || || || || || || | ||
Sbjct 42491 ATGCAAATATTCGTTAAAACGCTTACTGGAAAAACAATCACCCTCGAAGTGGAGCCGTCA 42432
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | ||||||| ||||| |||||| ||||| || ||||| ||||| ||||||||
Sbjct 42431 GACACCATTGAAAACGTTAAAACAAAAATACAAGACAAAGAAGGCATTCCACCTGATCAG 42372
Query 391170 CAACGTTTAATTTT 391183
|| || ||||||||
Sbjct 42371 CAGCGATTAATTTT 42358
Score = 95.1 bits (104), Expect = 5e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||| || ||||| | || || ||||| || || || || || || | ||
Sbjct 42208 AATGCAAATTTTTGTGAAAACTTTAACCGGAAAAACAATAACGCTGGAAGTGGAGCCGTC 42149
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
|| | |||||| | ||| |||||||| ||||||||||| ||||| ||||||||
Sbjct 42148 GGACACTATTGAAAACGTGAAAGCCAAAATTCAGGATAAGGAAGGTATTCCACCTGATCA 42089
Query 391169 ACAACGTTTAATTTT 391183
|||||||||||||||
Sbjct 42088 ACAACGTTTAATTTT 42074
Score = 89.7 bits (98), Expect = 2e-12
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || || || ||||| || || || ||||||||||| || || ||||| | ||
Sbjct 43339 ATGCAGATATTTGTGAAAACGCTAACCGGCAAAACTATTACGCTGGAAGTTGAGCCGTCC 43280
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| |||||| | || ||||||||||||||||||||||| ||||| |||||
Sbjct 43279 GATACCATTGATAACGTGAAGACGAAAATTCAAGATAAGGAAGGAATCCCTCCAGATCAG 43220
Query 391170 CAACGTTTAATTTT 391183
|| || |||| ||
Sbjct 43219 CAGCGACTAATCTT 43206
Score = 84.2 bits (92), Expect = 9e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || ||||| ||||| || ||||| || || ||||| || || || ||| | ||
Sbjct 42773 ATGCAGATATTCGTGAAAACTCTAACTGGCAAGACAATTACGCTGGAAGTGGAACCTTCG 42714
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| |||||| | | || ||||| ||||| || ||||| ||||| |||||||||
Sbjct 42713 GATACTATTGAAAATGTAAAGACTAAAATACAAGACAAAGAAGGTATTCCGCCTGATCAA 42654
Query 391170 CAACGTTTAATTTT 391183
|| || |||| ||
Sbjct 42653 CAGCGACTAATCTT 42640
>seq265
Length=70602
Score = 111 bits (122), Expect = 6e-19
Identities = 151/207 (73%), Gaps = 4/207 (2%)
Strand=Plus/Plus
Query 451220 AAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATG 451279
||||| |||| || ||||| | || ||||| || || ||||||| | || ||||||
Sbjct 25672 AAAGGAGAAA--AAGACTTTCTCGCCAGAAGAGATATCGGCTATGGTATTGACGAAAATG 25729
Query 451280 AAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCC 451339
|||||||| ||||| ||| |||| || || | || || |||| || |||
Sbjct 25730 AAAGAAACGGCAGAGGCGTATCTTGGCAAAAAGGTCACACACGCTGTGGTTACGGTGCCC 25789
Query 451340 GCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGG-ACATATTGCTGGTTT 451398
|| |||||||||||||| || || || ||||| || || ||||| ||| || |||||| |
Sbjct 25790 GCCTATTTCAATGATGCCCAGCGACAGGCAACAAAGGACGCAGGTACA-ATCGCTGGTCT 25848
Query 451399 AAATGTTCTTCGAATTATTAATGAACC 451425
|| |||||||| || || || |||||
Sbjct 25849 AACCGTTCTTCGGATCATCAACGAACC 25875
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975613195464848
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |