Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq195 251 5e-61
seq194 96.9 3e-14
>seq195
Length=92702
Score = 251 bits (278), Expect = 5e-61
Identities = 876/1355 (65%), Gaps = 24/1355 (2%)
Strand=Plus/Plus
Query 517370 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 517429
|| ||||| || | | ||||| || ||| | | ||||| ||| | | |||||
Sbjct 10649 TTGTCTTTGGTCATTGCGCGTTCGCCTTCGTACACCTGGATCAGCACTCCGGGCTGATTG 10708
Query 517430 TCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATA 517489
|| |||||||| || || ||| ||| || ||||| || ||||||| | ||
Sbjct 10709 TCGGAATAAGTAGTGAACACTTGGGACACCTTCGTTGGAATCGTAGTGTTTCGCTTTATC 10768
Query 517490 ATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACT 517549
| | |||||||| |||||| || ||||| | ||| | ||| | || || || || |
Sbjct 10769 AAAGCGGTCATAACACCACCGGCGGTTTCGATACCCAAAGATAAGGGCGTAACGTCCAAA 10828
Query 517550 AGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCA 517609
|| | || || ||| | || | | | || |||||||| || || | |||
Sbjct 10829 AGCAAAAGATCTTGCACCGCCTCGTGCTTGTCGCCTGACAGAATAGCCGCCTGTACCGCA 10888
Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669
|| || || || || || || || ||||| | | | || || | || ||||||||
Sbjct 10889 GCCCCGTAAGCTACGGCCTCGTCCGGATTGATGCTCTTGTTCAGCTCCTTTCCATTGAAG 10948
Query 517670 AAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728
|| | ||| | || || | || || |||||||| | || || ||||| || ||||
Sbjct 10949 AAGTCTTGCAGCAACTTTTGA-ACTTTCGGAATACGGGTCGAACCACCAACCAACACAAC 11007
Query 517729 TTCATGCACCTGTGATTTATCCAGTTTTGAATC-CAATAAAACTTTTTCAACGGGTTCAA 517787
|| |||||||| || || |||| || | ||| | | | |||||| |||| || || |
Sbjct 11008 ATCGTGCACCTGAGACTTGTCCAACTTGGCATCGCGAAGAGACTTTT-CAACTGGATCCA 11066
Query 517788 GACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT 517847
| || | ||||| || | ||||| |||||||| || | ||| | || |
Sbjct 11067 AAGTCGAGCGGAACAAATCGGCGCAAAGCTCTTCGAAACGGGCACGAGTGATCGTCGTGT 11126
Query 517848 TATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATA 517907
||| || || || ||| |||| ||||| ||| || | | ||| ||||| | ||
Sbjct 11127 AATAGTCGATGCCCTCGTACAAGCTATCAATTTCTATGCTCGCTTGGGTCGA----GCTA 11182
Query 517908 GTGCACGTT----TAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGAT 517963
| ||||| | || ||||| || ||||| | || | |||||||| | |||
Sbjct 11183 CTTAACGTTCTCTTGGCTCGTTCGCAAGCTGTACGTAAACGACGTAAGGCACGAG--GAT 11240
Query 517964 T----GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAG 518019
| || || ||| | || | ||| | |||||| || | || | || || |
Sbjct 11241 TTCCCGA--CATGTCTTTCTTGTTTTTGCGCTTGAACTCAGCCACGAAATGGGTCACCAT 11298
Query 518020 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 518079
||||| || || |||||||| || | | ||||| |||| ||||| |||||| ||
Sbjct 11299 GCGATTGTCGAAGTCTTCACCGCCAAGATGAGTATCGCCTGCCGTAGACTTTACTTCAAA 11358
Query 518080 AAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAAT 518139
| ||||| |||| | ||||| | ||||| ||| || || |||| ||| |||||
Sbjct 11359 TATACCATCCTCAATTGTCAAAATGGACACATCGAAGGTACCGCCGCCCAGATCGAAAAT 11418
Query 518140 AAGTACATTCATTTCTTT-GT-CTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCA 518197
|| ||||| |||| || | | || || ||||| || || || | |||||||||
Sbjct 11419 GAGCACATTTCGTTCTCCAGTACCT--TTCTTGTCAAGGCCGTAAGCGATTGCAGCAGCA 11476
Query 518198 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 518257
|||||||| || ||||||| | ||||| | |||| ||| | || || ||||| ||
Sbjct 11477 GTTGGTTCGTTGATAATTCGAAGGACATTCAATCCAGAAATGGTACCGGCGTCTTTCGTT 11536
Query 518258 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCT 518317
|| || || || ||||| || || ||||| |||||||| || |||||||| | || |
Sbjct 11537 GCCTGCCTCTGAGAATCATTGAAGTATGCCGGAACAGTGATGACGGCATCCTTCACGGTT 11596
Query 518318 TTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGT 518377
|| || | |||||| ||||| | |||||||| | | ||| | | || |
Sbjct 11597 TTGCCCAAATAAGCTTCCGCCGTCTCCTTCATTTTCACAAGCACCATAGCGCTGACTTCT 11656
Query 518378 TCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCA 518437
|| || | | | ||| | || || ||| || | || | ||| || |||
Sbjct 11657 TCGGGAGTAAACATCTTCGTCTCGCCTTTGTATTCCACCTGAATCTTTGGCTTGCCTCCA 11716
Query 518438 ACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAA 518497
|| | || || || || ||||| | ||||| || || || ||| ||||| |
Sbjct 11717 TCACTTATCACCTTGAAAGGCCAATGCTTCATGTCAGACTGCACAGCGGAGTCATCGTAT 11776
Query 518498 TCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGA 518557
|| || || | ||| || || || |||| || ||| ||||| | || | |||
Sbjct 11777 CGTCGCCCGATCAGTCGCTTCGCGTCGAAAACGGTGTTGTGGGGATTTAAAGCCACCTGA 11836
Query 518558 TATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTT 518617
| ||||| ||||| || ||||| || || || ||||| | |||||| || ||
Sbjct 11837 TTCTTGGCGGCATCGCCGATCAGCCTCTCCGTGTCCGTAAAAGCAACATAGCTCGGCGTA 11896
Query 518618 GTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACA 518677
|| || || || || || || || || || || || || |||| || |||| || ||
Sbjct 11897 GTTCGGTTGCCCTGGTCGTTGGCTATTATCTCCACCTTTCCATGCTGAAATACGCCAACG 11956
Query 518678 CAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 518712
||||| | || || || |||||||| |||| |||
Sbjct 11957 CAACTGTACGTAGTACCCAAATCAATTCCAACAGC 11991
>seq194
Length=92744
Score = 96.9 bits (106), Expect = 3e-14
Identities = 117/158 (74%), Gaps = 1/158 (1%)
Strand=Plus/Minus
Query 668849 TTAAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCT 668908
|||| ||| ||||||||||| ||| |||| || | ||||||||| | || ||| | ||
Sbjct 6904 TTAA-AGGCAAAGAAGGTCGCATTCGAGGTAACCTTATGGGAAAAAGGGTTGATTTCTCA 6846
Query 668909 GCACGTACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTCTT 668968
||| | || || || || | ||||||||| ||||||| | || | |||||||||
Sbjct 6845 GCAAGGACTGTGATCACGCCCGATCCCAATCTTGCTCTTGACCAATTGGGTGTTCCTAAA 6786
Query 668969 ATTATTGCTAAAAATCTTACTTTTGACGAAATTGTAAC 669006
| ||||| ||||||||||| | ||||||||| ||
Sbjct 6785 ACCATTGCCCAAAATCTTACTGTACCCGAAATTGTTAC 6748
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780616165590136
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |