Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq195 251 5e-61 seq194 96.9 3e-14 >seq195 Length=92702 Score = 251 bits (278), Expect = 5e-61 Identities = 876/1355 (65%), Gaps = 24/1355 (2%) Strand=Plus/Plus Query 517370 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 517429 || ||||| || | | ||||| || ||| | | ||||| ||| | | ||||| Sbjct 10649 TTGTCTTTGGTCATTGCGCGTTCGCCTTCGTACACCTGGATCAGCACTCCGGGCTGATTG 10708 Query 517430 TCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATA 517489 || |||||||| || || ||| ||| || ||||| || ||||||| | || Sbjct 10709 TCGGAATAAGTAGTGAACACTTGGGACACCTTCGTTGGAATCGTAGTGTTTCGCTTTATC 10768 Query 517490 ATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACT 517549 | | |||||||| |||||| || ||||| | ||| | ||| | || || || || | Sbjct 10769 AAAGCGGTCATAACACCACCGGCGGTTTCGATACCCAAAGATAAGGGCGTAACGTCCAAA 10828 Query 517550 AGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCA 517609 || | || || ||| | || | | | || |||||||| || || | ||| Sbjct 10829 AGCAAAAGATCTTGCACCGCCTCGTGCTTGTCGCCTGACAGAATAGCCGCCTGTACCGCA 10888 Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 || || || || || || || || ||||| | | | || || | || |||||||| Sbjct 10889 GCCCCGTAAGCTACGGCCTCGTCCGGATTGATGCTCTTGTTCAGCTCCTTTCCATTGAAG 10948 Query 517670 AAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728 || | ||| | || || | || || |||||||| | || || ||||| || |||| Sbjct 10949 AAGTCTTGCAGCAACTTTTGA-ACTTTCGGAATACGGGTCGAACCACCAACCAACACAAC 11007 Query 517729 TTCATGCACCTGTGATTTATCCAGTTTTGAATC-CAATAAAACTTTTTCAACGGGTTCAA 517787 || |||||||| || || |||| || | ||| | | | |||||| |||| || || | Sbjct 11008 ATCGTGCACCTGAGACTTGTCCAACTTGGCATCGCGAAGAGACTTTT-CAACTGGATCCA 11066 Query 517788 GACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT 517847 | || | ||||| || | ||||| |||||||| || | ||| | || | Sbjct 11067 AAGTCGAGCGGAACAAATCGGCGCAAAGCTCTTCGAAACGGGCACGAGTGATCGTCGTGT 11126 Query 517848 TATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATA 517907 ||| || || || ||| |||| ||||| ||| || | | ||| ||||| | || Sbjct 11127 AATAGTCGATGCCCTCGTACAAGCTATCAATTTCTATGCTCGCTTGGGTCGA----GCTA 11182 Query 517908 GTGCACGTT----TAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGAT 517963 | ||||| | || ||||| || ||||| | || | |||||||| | ||| Sbjct 11183 CTTAACGTTCTCTTGGCTCGTTCGCAAGCTGTACGTAAACGACGTAAGGCACGAG--GAT 11240 Query 517964 T----GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAG 518019 | || || ||| | || | ||| | |||||| || | || | || || | Sbjct 11241 TTCCCGA--CATGTCTTTCTTGTTTTTGCGCTTGAACTCAGCCACGAAATGGGTCACCAT 11298 Query 518020 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 518079 ||||| || || |||||||| || | | ||||| |||| ||||| |||||| || Sbjct 11299 GCGATTGTCGAAGTCTTCACCGCCAAGATGAGTATCGCCTGCCGTAGACTTTACTTCAAA 11358 Query 518080 AAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAAT 518139 | ||||| |||| | ||||| | ||||| ||| || || |||| ||| ||||| Sbjct 11359 TATACCATCCTCAATTGTCAAAATGGACACATCGAAGGTACCGCCGCCCAGATCGAAAAT 11418 Query 518140 AAGTACATTCATTTCTTT-GT-CTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCA 518197 || ||||| |||| || | | || || ||||| || || || | ||||||||| Sbjct 11419 GAGCACATTTCGTTCTCCAGTACCT--TTCTTGTCAAGGCCGTAAGCGATTGCAGCAGCA 11476 Query 518198 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 518257 |||||||| || ||||||| | ||||| | |||| ||| | || || ||||| || Sbjct 11477 GTTGGTTCGTTGATAATTCGAAGGACATTCAATCCAGAAATGGTACCGGCGTCTTTCGTT 11536 Query 518258 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCT 518317 || || || || ||||| || || ||||| |||||||| || |||||||| | || | Sbjct 11537 GCCTGCCTCTGAGAATCATTGAAGTATGCCGGAACAGTGATGACGGCATCCTTCACGGTT 11596 Query 518318 TTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGT 518377 || || | |||||| ||||| | |||||||| | | ||| | | || | Sbjct 11597 TTGCCCAAATAAGCTTCCGCCGTCTCCTTCATTTTCACAAGCACCATAGCGCTGACTTCT 11656 Query 518378 TCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCA 518437 || || | | | ||| | || || ||| || | || | ||| || ||| Sbjct 11657 TCGGGAGTAAACATCTTCGTCTCGCCTTTGTATTCCACCTGAATCTTTGGCTTGCCTCCA 11716 Query 518438 ACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAA 518497 || | || || || || ||||| | ||||| || || || ||| ||||| | Sbjct 11717 TCACTTATCACCTTGAAAGGCCAATGCTTCATGTCAGACTGCACAGCGGAGTCATCGTAT 11776 Query 518498 TCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGA 518557 || || || | ||| || || || |||| || ||| ||||| | || | ||| Sbjct 11777 CGTCGCCCGATCAGTCGCTTCGCGTCGAAAACGGTGTTGTGGGGATTTAAAGCCACCTGA 11836 Query 518558 TATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTT 518617 | ||||| ||||| || ||||| || || || ||||| | |||||| || || Sbjct 11837 TTCTTGGCGGCATCGCCGATCAGCCTCTCCGTGTCCGTAAAAGCAACATAGCTCGGCGTA 11896 Query 518618 GTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACA 518677 || || || || || || || || || || || || || |||| || |||| || || Sbjct 11897 GTTCGGTTGCCCTGGTCGTTGGCTATTATCTCCACCTTTCCATGCTGAAATACGCCAACG 11956 Query 518678 CAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 518712 ||||| | || || || |||||||| |||| ||| Sbjct 11957 CAACTGTACGTAGTACCCAAATCAATTCCAACAGC 11991 >seq194 Length=92744 Score = 96.9 bits (106), Expect = 3e-14 Identities = 117/158 (74%), Gaps = 1/158 (1%) Strand=Plus/Minus Query 668849 TTAAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCT 668908 |||| ||| ||||||||||| ||| |||| || | ||||||||| | || ||| | || Sbjct 6904 TTAA-AGGCAAAGAAGGTCGCATTCGAGGTAACCTTATGGGAAAAAGGGTTGATTTCTCA 6846 Query 668909 GCACGTACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTCTT 668968 ||| | || || || || | ||||||||| ||||||| | || | ||||||||| Sbjct 6845 GCAAGGACTGTGATCACGCCCGATCCCAATCTTGCTCTTGACCAATTGGGTGTTCCTAAA 6786 Query 668969 ATTATTGCTAAAAATCTTACTTTTGACGAAATTGTAAC 669006 | ||||| ||||||||||| | ||||||||| || Sbjct 6785 ACCATTGCCCAAAATCTTACTGTACCCGAAATTGTTAC 6748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780616165590136