Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq195 351 1e-91
seq265 122 1e-22
>seq195
Length=92702
Score = 351 bits (388), Expect = 1e-91
Identities = 841/1259 (67%), Gaps = 16/1259 (1%)
Strand=Plus/Plus
Query 6889 CTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTTC 6948
||| | ||||||||| || |||| | || | | |||||||| |||||| |||||
Sbjct 10738 CTTCGTTGGAATCGTAGTGTTTCGCTTTATCAAAGCGGTCATAACACCACCGGCGGTTTC 10797
Query 6949 GAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCC 7008
|| || | ||| | || || |||||||| || || || ||||| || | |||| |
Sbjct 10798 GATACCCAAAGATAAGGGCGTAACGTCCAAAAGCAAAAGATCTTGCACCGCCTCGTGCTT 10857
Query 7009 TTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTT 7068
|| || | | || || || || |||| |||||||| || || ||||| || || ||
Sbjct 10858 GTCGCCTGACAGAATAGCCGCCTGTACCGCAGCCCCGTAAGCTACGGCCTCGTCCGGATT 10917
Query 7069 AATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGG 7128
|| | || ||||| || || || || || | || | || | ||||| ||||||
Sbjct 10918 GATGCTCTTGTTCAGCTCCTTTCCATTGAAGAAGTCTTGCAGCAACTTTTGAACTTTCGG 10977
Query 7129 GATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGA 7188
|| || ||||| ||||| ||||| || | || | ||| | || || || | ||| |
Sbjct 10978 AATACGGGTCGAACCACCAACCAACACAACATCGTGCACCTGAGACTTGTCCAACTTGGC 11037
Query 7189 GTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTC 7248
|| ||||| | ||||| || || |||| | |||||||| || || || ||
Sbjct 11038 ATCGCGAAGAGACTTTTCAACTGGATCCAAAGTCGAGCGGAACAAATCGGCGCAAAGCTC 11097
Query 7249 CTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAAT 7308
|| ||||| ||||| || || | || || | || | ||| ||||| || ||||||
Sbjct 11098 TTCGAAACGGGCACGAGTGATCGTCGTGTAATAGTCGATGCCCTCGTACAAGCTATCAAT 11157
Query 7309 TTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCG 7368
||| ||| | | ||| | || | |||||||| ||| || || || || || || ||
Sbjct 11158 TTCTATGCTCGCTTGGGTCGAGCTACTTAACGTTCTCTTGGCTCGTTCGCAAGCTGTACG 11217
Query 7369 TAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTC 7428
||||||||| | |||||| || || || || || |||||||| | ||| || || |||||
Sbjct 11218 TAAACGACGTAAGGCACGAGGATTTCCCGACATGTCTTTCTTGTTTTTGCGCTTGAACTC 11277
Query 7429 TTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCC 7488
| ||| || | | | ||||| |||||||| || | || ||||| ||
Sbjct 11278 AGCCACGAAATGGGTCACCATGCGATTGTCGAAGTCTTCACCGCCAAGATGAGTATCGCC 11337
Query 7489 CGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGT 7548
|| || | || |||||||| ||||| | ||||| | || | || ||||| || ||
Sbjct 11338 TGCCGTAGACTTTACTTCAAATATACCATCCTCAATTGTCAAAATGGACACATCGAAGGT 11397
Query 7549 ACCACCACCCAGGTCAAAAATGAGTAC-GTTCGTATCGTC-GTCTTTGTTCTTATCGAGA 7606
||| || ||||| || |||||||| || ||||| || | || | ||||| || ||
Sbjct 11398 ACCGCCGCCCAGATCGAAAATGAGCACATTTCGT-TCTCCAGTACCT-TTCTTGTCAAGG 11455
Query 7607 CCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAA-GACAGTTCAGGCCAGC 7665
||||| ||||| || || || |||||||| || ||||| |||| |||| |||| ||||
Sbjct 11456 CCGTAAGCGATTGCAGCAGCAGTTGGTTCGTTGATAATTCGAAGGACA-TTCAATCCAGA 11514
Query 7666 AATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGT 7725
||| || | || |||||||| || || | || ||||| || ||||| ||||| || ||
Sbjct 11515 AATGGTACCGGCGTCTTTCGTTGCCTGCCTCTGAGAATCATTGAAGTATGCCGGAACAGT 11574
Query 7726 TACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGT 7785
| ||| || ||| | || | || || | ||| | |||||| | || ||||||||
Sbjct 11575 GATGACGGCATCCTTCACGGTTTTGCCCAAATAAGCTTCCGCCGTCTCCTTCATTTTCAC 11634
Query 7786 AAGAACCAT--CGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCA 7843
||| ||||| || || | ||||| | | |||| ||||| || || || | ||
Sbjct 11635 AAGCACCATAGCGCTG--ACTTCTTCGGGAGTAAACATCTTCGTCTCGCCTTTGTATTCC 11692
Query 7844 ACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATA 7903
|| | |||| | || || | || ||| || ||||| | | ||||| |||||
Sbjct 11693 ACCTGAATCTTTGGCTTGCCTCCATCAC---TTATCACCTTGAAAGGCCAATGCTTCATG 11749
Query 7904 TCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACT 7963
|| || || ||| | || ||||| || ||||| || || |||||
Sbjct 11750 TCAGACTGCACAGCGGAGTCATCGTATCGTCGCCCGATCAGTCGCTTCGCGTCGAAAACG 11809
Query 7964 GTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTA 8023
||||| | ||| || | || || ||||| || || || ||||| || | || |
Sbjct 11810 GTGTTGTGGGGATTTAAAGCCACCTGATTCTTGGCGGCATCGCCGATCAGCC--TC-TCC 11866
Query 8024 TTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATT 8083
| |||||||| || || || || || ||||| || || |||||||| || || ||
Sbjct 11867 GTGTCCGTAAAAGCAACATAGCTCGGCGTAGTTCGGTTGCCCTGGTCGTTGGCTATTATC 11926
Query 8084 TCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACC 8142
|| || | | || | ||||| ||||| ||||| || || |||||||| ||
Sbjct 11927 TCCACCTTTCCATGCTGAAATACGCCAACGCAACTGTACGTAGTACCCAAATCAATTCC 11985
>seq265
Length=70602
Score = 122 bits (134), Expect = 1e-22
Identities = 327/490 (67%), Gaps = 15/490 (3%)
Strand=Plus/Minus
Query 7631 GGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690
||||| || || || |||||| | | || ||||| || || | || || || || ||
Sbjct 25875 GGTTCGTTGATGATCCGAAGAACGGTTAGACCAGCGATTGTACCTGCGTCCTTTGTTGCC 25816
Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750
||||| || | ||| || || ||||| || ||||| || || |||| ||||| || ||
Sbjct 25815 TGTCGCTGGGCATCATTGAAATAGGCGGGCACCGTAACCACAGCGTGTGTGACCTTTTTG 25756
Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCA 7810
|| ||||||| || || | ||||||||||| || | ||||| | || ||||||||
Sbjct 25755 CCAAGATACGCCTCTGCCGTTTCTTTCATTTTCGTCAATACCATAGCCGATATCTCTTCT 25696
Query 7811 GCCG-CAAACTGTTTCGTTTCACCGTT--AAAATCAACTTCAATCATG-GGTTTATCCGC 7866
| || ||| | || |||| || || | ||| |||| | || ||||| |||
Sbjct 25695 GGCGAGAAAGTCTT---TTTCTCCTTTCCTACGGTAACCTCAA-CGTGCGGTTTGCCCG- 25641
Query 7867 AGCACCG-GGGATAACCTTATACGACCA-ATCTTTCATATCGTCTTGGACCTGTTGGTCC 7924
|| | ||| || || | | ||| ||||||| || |||| | || ||||
Sbjct 25640 ---ACTGTTCGATCACTTTGAATGGCCACATCTTTC-GGTCTGCTTGTAAACTTTTGTCC 25585
Query 7925 GAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCT 7984
|| | | | ||||| | || || || || || || || |||| ||| ||| |
Sbjct 25584 GACCATTCACGACCGATCATTCGTTTGGCGTCGAATACGGTATTTTCGGGATTCGACGTC 25525
Query 7985 GTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTAC 8044
|||||||| ||||| || || || ||||||||| | || ||||| |||||
Sbjct 25524 AACTGGTTCTTGGCCGCATCGCCTATTAGACGTTCACCTTCGGGAGTGAACGCCACGTAT 25465
Query 8045 GATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAG 8104
|| || || | ||||| |||||||| || || || ||||| || || | |||| |
Sbjct 25464 GACGGTGTGATCCGATTGCCTTGGTCATTAGCGATGATTTCGACACGACCATTTTTAAAA 25405
Query 8105 ACGCCGACGC 8114
||||| ||||
Sbjct 25404 ACGCCAACGC 25395
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635099804851040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |