Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq195 351 1e-91 seq265 122 1e-22 >seq195 Length=92702 Score = 351 bits (388), Expect = 1e-91 Identities = 841/1259 (67%), Gaps = 16/1259 (1%) Strand=Plus/Plus Query 6889 CTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTTC 6948 ||| | ||||||||| || |||| | || | | |||||||| |||||| ||||| Sbjct 10738 CTTCGTTGGAATCGTAGTGTTTCGCTTTATCAAAGCGGTCATAACACCACCGGCGGTTTC 10797 Query 6949 GAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCC 7008 || || | ||| | || || |||||||| || || || ||||| || | |||| | Sbjct 10798 GATACCCAAAGATAAGGGCGTAACGTCCAAAAGCAAAAGATCTTGCACCGCCTCGTGCTT 10857 Query 7009 TTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTT 7068 || || | | || || || || |||| |||||||| || || ||||| || || || Sbjct 10858 GTCGCCTGACAGAATAGCCGCCTGTACCGCAGCCCCGTAAGCTACGGCCTCGTCCGGATT 10917 Query 7069 AATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGG 7128 || | || ||||| || || || || || | || | || | ||||| |||||| Sbjct 10918 GATGCTCTTGTTCAGCTCCTTTCCATTGAAGAAGTCTTGCAGCAACTTTTGAACTTTCGG 10977 Query 7129 GATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGA 7188 || || ||||| ||||| ||||| || | || | ||| | || || || | ||| | Sbjct 10978 AATACGGGTCGAACCACCAACCAACACAACATCGTGCACCTGAGACTTGTCCAACTTGGC 11037 Query 7189 GTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTC 7248 || ||||| | ||||| || || |||| | |||||||| || || || || Sbjct 11038 ATCGCGAAGAGACTTTTCAACTGGATCCAAAGTCGAGCGGAACAAATCGGCGCAAAGCTC 11097 Query 7249 CTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAAT 7308 || ||||| ||||| || || | || || | || | ||| ||||| || |||||| Sbjct 11098 TTCGAAACGGGCACGAGTGATCGTCGTGTAATAGTCGATGCCCTCGTACAAGCTATCAAT 11157 Query 7309 TTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCG 7368 ||| ||| | | ||| | || | |||||||| ||| || || || || || || || Sbjct 11158 TTCTATGCTCGCTTGGGTCGAGCTACTTAACGTTCTCTTGGCTCGTTCGCAAGCTGTACG 11217 Query 7369 TAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTC 7428 ||||||||| | |||||| || || || || || |||||||| | ||| || || ||||| Sbjct 11218 TAAACGACGTAAGGCACGAGGATTTCCCGACATGTCTTTCTTGTTTTTGCGCTTGAACTC 11277 Query 7429 TTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCC 7488 | ||| || | | | ||||| |||||||| || | || ||||| || Sbjct 11278 AGCCACGAAATGGGTCACCATGCGATTGTCGAAGTCTTCACCGCCAAGATGAGTATCGCC 11337 Query 7489 CGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGT 7548 || || | || |||||||| ||||| | ||||| | || | || ||||| || || Sbjct 11338 TGCCGTAGACTTTACTTCAAATATACCATCCTCAATTGTCAAAATGGACACATCGAAGGT 11397 Query 7549 ACCACCACCCAGGTCAAAAATGAGTAC-GTTCGTATCGTC-GTCTTTGTTCTTATCGAGA 7606 ||| || ||||| || |||||||| || ||||| || | || | ||||| || || Sbjct 11398 ACCGCCGCCCAGATCGAAAATGAGCACATTTCGT-TCTCCAGTACCT-TTCTTGTCAAGG 11455 Query 7607 CCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAA-GACAGTTCAGGCCAGC 7665 ||||| ||||| || || || |||||||| || ||||| |||| |||| |||| |||| Sbjct 11456 CCGTAAGCGATTGCAGCAGCAGTTGGTTCGTTGATAATTCGAAGGACA-TTCAATCCAGA 11514 Query 7666 AATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGT 7725 ||| || | || |||||||| || || | || ||||| || ||||| ||||| || || Sbjct 11515 AATGGTACCGGCGTCTTTCGTTGCCTGCCTCTGAGAATCATTGAAGTATGCCGGAACAGT 11574 Query 7726 TACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGT 7785 | ||| || ||| | || | || || | ||| | |||||| | || |||||||| Sbjct 11575 GATGACGGCATCCTTCACGGTTTTGCCCAAATAAGCTTCCGCCGTCTCCTTCATTTTCAC 11634 Query 7786 AAGAACCAT--CGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCA 7843 ||| ||||| || || | ||||| | | |||| ||||| || || || | || Sbjct 11635 AAGCACCATAGCGCTG--ACTTCTTCGGGAGTAAACATCTTCGTCTCGCCTTTGTATTCC 11692 Query 7844 ACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATA 7903 || | |||| | || || | || ||| || ||||| | | ||||| ||||| Sbjct 11693 ACCTGAATCTTTGGCTTGCCTCCATCAC---TTATCACCTTGAAAGGCCAATGCTTCATG 11749 Query 7904 TCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACT 7963 || || || ||| | || ||||| || ||||| || || ||||| Sbjct 11750 TCAGACTGCACAGCGGAGTCATCGTATCGTCGCCCGATCAGTCGCTTCGCGTCGAAAACG 11809 Query 7964 GTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTA 8023 ||||| | ||| || | || || ||||| || || || ||||| || | || | Sbjct 11810 GTGTTGTGGGGATTTAAAGCCACCTGATTCTTGGCGGCATCGCCGATCAGCC--TC-TCC 11866 Query 8024 TTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATT 8083 | |||||||| || || || || || ||||| || || |||||||| || || || Sbjct 11867 GTGTCCGTAAAAGCAACATAGCTCGGCGTAGTTCGGTTGCCCTGGTCGTTGGCTATTATC 11926 Query 8084 TCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACC 8142 || || | | || | ||||| ||||| ||||| || || |||||||| || Sbjct 11927 TCCACCTTTCCATGCTGAAATACGCCAACGCAACTGTACGTAGTACCCAAATCAATTCC 11985 >seq265 Length=70602 Score = 122 bits (134), Expect = 1e-22 Identities = 327/490 (67%), Gaps = 15/490 (3%) Strand=Plus/Minus Query 7631 GGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690 ||||| || || || |||||| | | || ||||| || || | || || || || || Sbjct 25875 GGTTCGTTGATGATCCGAAGAACGGTTAGACCAGCGATTGTACCTGCGTCCTTTGTTGCC 25816 Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750 ||||| || | ||| || || ||||| || ||||| || || |||| ||||| || || Sbjct 25815 TGTCGCTGGGCATCATTGAAATAGGCGGGCACCGTAACCACAGCGTGTGTGACCTTTTTG 25756 Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCA 7810 || ||||||| || || | ||||||||||| || | ||||| | || |||||||| Sbjct 25755 CCAAGATACGCCTCTGCCGTTTCTTTCATTTTCGTCAATACCATAGCCGATATCTCTTCT 25696 Query 7811 GCCG-CAAACTGTTTCGTTTCACCGTT--AAAATCAACTTCAATCATG-GGTTTATCCGC 7866 | || ||| | || |||| || || | ||| |||| | || ||||| ||| Sbjct 25695 GGCGAGAAAGTCTT---TTTCTCCTTTCCTACGGTAACCTCAA-CGTGCGGTTTGCCCG- 25641 Query 7867 AGCACCG-GGGATAACCTTATACGACCA-ATCTTTCATATCGTCTTGGACCTGTTGGTCC 7924 || | ||| || || | | ||| ||||||| || |||| | || |||| Sbjct 25640 ---ACTGTTCGATCACTTTGAATGGCCACATCTTTC-GGTCTGCTTGTAAACTTTTGTCC 25585 Query 7925 GAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCT 7984 || | | | ||||| | || || || || || || || |||| ||| ||| | Sbjct 25584 GACCATTCACGACCGATCATTCGTTTGGCGTCGAATACGGTATTTTCGGGATTCGACGTC 25525 Query 7985 GTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTAC 8044 |||||||| ||||| || || || ||||||||| | || ||||| ||||| Sbjct 25524 AACTGGTTCTTGGCCGCATCGCCTATTAGACGTTCACCTTCGGGAGTGAACGCCACGTAT 25465 Query 8045 GATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAG 8104 || || || | ||||| |||||||| || || || ||||| || || | |||| | Sbjct 25464 GACGGTGTGATCCGATTGCCTTGGTCATTAGCGATGATTTCGACACGACCATTTTTAAAA 25405 Query 8105 ACGCCGACGC 8114 ||||| |||| Sbjct 25404 ACGCCAACGC 25395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635099804851040