Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_015251.1
Length=235229
Score E
Sequences producing significant alignments: (Bits) Value
seq732 136 6e-27
seq1870 107 3e-18
seq1599 104 4e-17
>seq732
Length=24842
Score = 136 bits (150), Expect = 6e-27
Identities = 234/340 (69%), Gaps = 0/340 (0%)
Strand=Plus/Minus
Query 29665 TCTAGTGCAATTCTAGGAAGATTCAGAGTAATCACACCCAAGTTTTGACGACCATCGTGG 29724
|| || ||||| | || || ||||| | ||||| || | ||| | |||||||||||||
Sbjct 609 TCCAGAGCAATACGCGGCAGGTTCAGGCTGATCACGCCGAGGTTGTTACGACCATCGTGG 550
Query 29725 ATCTCTTCACCATGTTCATTTTCCCATCGACCCAAGAATGAACGACAACCCATGGGGGAT 29784
|||| || || | |||||||||||| || | ||| || || ||||| |||| |
Sbjct 549 ATCTGCTCGCCGTTTTCATTTTCCCACACGCCGAGGAAGCTGCGGCAGCCCATCGGGGTT 490
Query 29785 TTATAAGAACCTGTGACCTTTACCACTTGATCGTAACTCATAATATCCGGATATATACGC 29844
||| | ||||| ||||| || || || |||||||| ||| ||||||||||| || |||
Sbjct 489 TTAAACGAACCGGTGACTTTCACTACCTGATCGTAGTTCAGGATATCCGGATACATGCGC 430
Query 29845 TTAGACGAACACTCAAGAGCAAGTTGTTTTATATCGTAATGAGGATCCCAAGGATTCAGA 29904
|| | ||||| || || || ||||| || ||||| | ||||| | || |
Sbjct 429 TTGCTTGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTTCGGATCGCCTTTTTTATGG 370
Query 29905 TTAAGACCGTCTTTAAGAGTGAATACAAGTTTAGGAAATACAGCAGTTTCTTTATCTTCA 29964
|| ||||| || || | || || ||||| || || || ||||||| | || |
Sbjct 369 TTCAGACCATCGCGAATCGCAAACACCAGTTTCGGGAACACCGCAGTTTTACGGTTTTTA 310
Query 29965 CCAAGTCCATCAATACGGACTCTCAAGATCATTTCCTGAA 30004
|| || || | |||||| | || ||| ||||||||
Sbjct 309 CCGAGGCCTGCGATACGGTTACGCAGGATAGATTCCTGAA 270
>seq1870
Length=4832
Score = 107 bits (118), Expect = 3e-18
Identities = 125/166 (75%), Gaps = 2/166 (1%)
Strand=Plus/Minus
Query 112202 TGCGCTGTTAGCTCAGTTGGATAGAGCAACGTTCTTCTAAAGCGTGGGTCGCTGGTTCGA 112261
|| || |||||||||||||| ||||||| | ||| ||| | ||||| |||||||||
Sbjct 763 TGAGCCGTTAGCTCAGTTGG-TAGAGCATCTGACTTTTAATCAGAGGGTCACTGGTTCGA 705
Query 112262 ATCCAGCACGGCGCACCAAAATTCGGGGATGTGGTGAAATTGGCAGACACACCAGATTTA 112321
|||| ||||| || | || | || ||||| | ||||||||||| ||| |||||||
Sbjct 704 GCCCAGTACGGCTCATAAGTATATGCGGGTGTGGCGGAATTGGCAGACGCACTAGATTTA 645
Query 112322 GGTTCTGGCG-CTTATAGCGTGACGGTTCGAGTCCGTCCATCCCCA 112366
|| ||| ||| |||| ||||| ||||| ||||| | || || ||
Sbjct 644 GGATCTAGCGCCTTACGGCGTGGGGGTTCAAGTCCCTTCACCCGCA 599
>seq1599
Length=6876
Score = 104 bits (114), Expect = 4e-17
Identities = 114/149 (77%), Gaps = 2/149 (1%)
Strand=Plus/Plus
Query 112208 GTTAGCTCAGTTGGATAGAGCAACGTTCTTCTAAAGCGTGGGTCGCTGGTTCGAATCCAG 112267
|||||||||||||| ||||||| | ||| ||| | ||||| ||||||||| ||||
Sbjct 766 GTTAGCTCAGTTGG-TAGAGCATCTGACTTTTAATCAGAGGGTCACTGGTTCGAGCCCAG 824
Query 112268 CACGGCGCACCAAAATTCGGGGATGTGGTGAAATTGGCAGACACACCAGATTTAGGTTCT 112327
|||| || ||| | || | ||| | ||||||||||| ||||||||||||| |||
Sbjct 825 TACGGGTCATATTAATATGCGGGTTTGGCGGAATTGGCAGACGCACCAGATTTAGGATCT 884
Query 112328 GGCGCTT-ATAGCGTGACGGTTCGAGTCC 112355
||||||| | ||||| ||||| |||||
Sbjct 885 GGCGCTTAACGGCGTGGGGGTTCAAGTCC 913
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 752565702180640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |