Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_015251.1 Length=235229 Score E Sequences producing significant alignments: (Bits) Value seq732 136 6e-27 seq1870 107 3e-18 seq1599 104 4e-17 >seq732 Length=24842 Score = 136 bits (150), Expect = 6e-27 Identities = 234/340 (69%), Gaps = 0/340 (0%) Strand=Plus/Minus Query 29665 TCTAGTGCAATTCTAGGAAGATTCAGAGTAATCACACCCAAGTTTTGACGACCATCGTGG 29724 || || ||||| | || || ||||| | ||||| || | ||| | ||||||||||||| Sbjct 609 TCCAGAGCAATACGCGGCAGGTTCAGGCTGATCACGCCGAGGTTGTTACGACCATCGTGG 550 Query 29725 ATCTCTTCACCATGTTCATTTTCCCATCGACCCAAGAATGAACGACAACCCATGGGGGAT 29784 |||| || || | |||||||||||| || | ||| || || ||||| |||| | Sbjct 549 ATCTGCTCGCCGTTTTCATTTTCCCACACGCCGAGGAAGCTGCGGCAGCCCATCGGGGTT 490 Query 29785 TTATAAGAACCTGTGACCTTTACCACTTGATCGTAACTCATAATATCCGGATATATACGC 29844 ||| | ||||| ||||| || || || |||||||| ||| ||||||||||| || ||| Sbjct 489 TTAAACGAACCGGTGACTTTCACTACCTGATCGTAGTTCAGGATATCCGGATACATGCGC 430 Query 29845 TTAGACGAACACTCAAGAGCAAGTTGTTTTATATCGTAATGAGGATCCCAAGGATTCAGA 29904 || | ||||| || || || ||||| || ||||| | ||||| | || | Sbjct 429 TTGCTTGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTTCGGATCGCCTTTTTTATGG 370 Query 29905 TTAAGACCGTCTTTAAGAGTGAATACAAGTTTAGGAAATACAGCAGTTTCTTTATCTTCA 29964 || ||||| || || | || || ||||| || || || ||||||| | || | Sbjct 369 TTCAGACCATCGCGAATCGCAAACACCAGTTTCGGGAACACCGCAGTTTTACGGTTTTTA 310 Query 29965 CCAAGTCCATCAATACGGACTCTCAAGATCATTTCCTGAA 30004 || || || | |||||| | || ||| |||||||| Sbjct 309 CCGAGGCCTGCGATACGGTTACGCAGGATAGATTCCTGAA 270 >seq1870 Length=4832 Score = 107 bits (118), Expect = 3e-18 Identities = 125/166 (75%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 112202 TGCGCTGTTAGCTCAGTTGGATAGAGCAACGTTCTTCTAAAGCGTGGGTCGCTGGTTCGA 112261 || || |||||||||||||| ||||||| | ||| ||| | ||||| ||||||||| Sbjct 763 TGAGCCGTTAGCTCAGTTGG-TAGAGCATCTGACTTTTAATCAGAGGGTCACTGGTTCGA 705 Query 112262 ATCCAGCACGGCGCACCAAAATTCGGGGATGTGGTGAAATTGGCAGACACACCAGATTTA 112321 |||| ||||| || | || | || ||||| | ||||||||||| ||| ||||||| Sbjct 704 GCCCAGTACGGCTCATAAGTATATGCGGGTGTGGCGGAATTGGCAGACGCACTAGATTTA 645 Query 112322 GGTTCTGGCG-CTTATAGCGTGACGGTTCGAGTCCGTCCATCCCCA 112366 || ||| ||| |||| ||||| ||||| ||||| | || || || Sbjct 644 GGATCTAGCGCCTTACGGCGTGGGGGTTCAAGTCCCTTCACCCGCA 599 >seq1599 Length=6876 Score = 104 bits (114), Expect = 4e-17 Identities = 114/149 (77%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 112208 GTTAGCTCAGTTGGATAGAGCAACGTTCTTCTAAAGCGTGGGTCGCTGGTTCGAATCCAG 112267 |||||||||||||| ||||||| | ||| ||| | ||||| ||||||||| |||| Sbjct 766 GTTAGCTCAGTTGG-TAGAGCATCTGACTTTTAATCAGAGGGTCACTGGTTCGAGCCCAG 824 Query 112268 CACGGCGCACCAAAATTCGGGGATGTGGTGAAATTGGCAGACACACCAGATTTAGGTTCT 112327 |||| || ||| | || | ||| | ||||||||||| ||||||||||||| ||| Sbjct 825 TACGGGTCATATTAATATGCGGGTTTGGCGGAATTGGCAGACGCACCAGATTTAGGATCT 884 Query 112328 GGCGCTT-ATAGCGTGACGGTTCGAGTCC 112355 ||||||| | ||||| ||||| ||||| Sbjct 885 GGCGCTTAACGGCGTGGGGGTTCAAGTCC 913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 752565702180640