Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_015252.1 Length=36953 Score E Sequences producing significant alignments: (Bits) Value seq729 114 3e-21 >seq729 Length=25020 Score = 114 bits (126), Expect = 3e-21 Identities = 204/295 (69%), Gaps = 6/295 (2%) Strand=Plus/Minus Query 32040 TGATGAATCGAGTTGTTTTAGTGGGCCGTTTAACAAAGGACCCCGAATTGAAATATACAC 32099 |||| ||| ||||| |||| || |||||||||||||| || || || | ||||| Sbjct 1324 TGATTAATAATGTTGTACTAGTTGGTCGTTTAACAAAGGATCCTGATTT--ACGCTACAC 1267 Query 32100 CTGCA---GGAGCAGCAGTTGCCACATTTACACTAGCTGTAAATCGTACGTTTACGAATC 32156 | ||| || ||| |||||||| ||||| ||||||| ||||||| |||||||||| Sbjct 1266 C-GCAAATGGTACAGGTGTTGCCACGTTTACTTTAGCTGTGAATCGTAATTTTACGAATC 1208 Query 32157 AGCAAGGTGAGCGTGAAGCTGATTACATTAACTGTGTCGTTTGGCGTAAGGCTGCCGAAA 32216 | || | || || || |||| || || ||||| ||||||| || | || |||| Sbjct 1207 AAAGCGGGAATCGCGAGGCGGATTTTATCAATTGTGTAATTTGGCGGAAATCAGCAGAAA 1148 Query 32217 GCGTAGCTAACTACTTGAAAAAAGGAAGTTTAGCAGGTGTTGATGGTCGATTACAAACAC 32276 ||||||| || | ||||||| | | |||||| ||| || | |||||| Sbjct 1147 CTTTAGCTAATTATGCGCGCAAAGGAACTCTTTTAGGTGTGACTGGCCGTATCCAAACAA 1088 Query 32277 GTAACTATGAAGGCAATGACGGTAAGCGTGTATATGTGACAGAGGTCATTGCGGA 32331 | || |||||| | | || | ||||| ||||||||||| || |||| || Sbjct 1087 GAAATTATGAAAATCAGCAAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGA 1033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118122170087880