Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_015252.1
Length=36953
Score E
Sequences producing significant alignments: (Bits) Value
seq729 114 3e-21
>seq729
Length=25020
Score = 114 bits (126), Expect = 3e-21
Identities = 204/295 (69%), Gaps = 6/295 (2%)
Strand=Plus/Minus
Query 32040 TGATGAATCGAGTTGTTTTAGTGGGCCGTTTAACAAAGGACCCCGAATTGAAATATACAC 32099
|||| ||| ||||| |||| || |||||||||||||| || || || | |||||
Sbjct 1324 TGATTAATAATGTTGTACTAGTTGGTCGTTTAACAAAGGATCCTGATTT--ACGCTACAC 1267
Query 32100 CTGCA---GGAGCAGCAGTTGCCACATTTACACTAGCTGTAAATCGTACGTTTACGAATC 32156
| ||| || ||| |||||||| ||||| ||||||| ||||||| ||||||||||
Sbjct 1266 C-GCAAATGGTACAGGTGTTGCCACGTTTACTTTAGCTGTGAATCGTAATTTTACGAATC 1208
Query 32157 AGCAAGGTGAGCGTGAAGCTGATTACATTAACTGTGTCGTTTGGCGTAAGGCTGCCGAAA 32216
| || | || || || |||| || || ||||| ||||||| || | || ||||
Sbjct 1207 AAAGCGGGAATCGCGAGGCGGATTTTATCAATTGTGTAATTTGGCGGAAATCAGCAGAAA 1148
Query 32217 GCGTAGCTAACTACTTGAAAAAAGGAAGTTTAGCAGGTGTTGATGGTCGATTACAAACAC 32276
||||||| || | ||||||| | | |||||| ||| || | ||||||
Sbjct 1147 CTTTAGCTAATTATGCGCGCAAAGGAACTCTTTTAGGTGTGACTGGCCGTATCCAAACAA 1088
Query 32277 GTAACTATGAAGGCAATGACGGTAAGCGTGTATATGTGACAGAGGTCATTGCGGA 32331
| || |||||| | | || | ||||| ||||||||||| || |||| ||
Sbjct 1087 GAAATTATGAAAATCAGCAAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGA 1033
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 118122170087880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |