Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_015265.1
Length=37236
Score E
Sequences producing significant alignments: (Bits) Value
seq1011 134 3e-27
>seq1011
Length=14871
Score = 134 bits (148), Expect = 3e-27
Identities = 329/491 (67%), Gaps = 11/491 (2%)
Strand=Plus/Plus
Query 9180 GTGATCGGGCCGTATTACCCGAAGGGCGAGCG-TGGCCGGCCGCCGATTGGCCTGGAACG 9238
|| |||| ||||| ||| || |||| || || |||||| | ||| | |||||
Sbjct 9809 GTCATCGAGCCGTTTTATCCCAAGG-CGGGCAATGGCCGACGGCCCTATCCGCTGGAGAC 9867
Query 9239 GATGCTGCGGATCTACTTGCTGCAGCAGTGGTACGGGTTGTCGGACGAAGGGCTTGAAGA 9298
|||||||| || ||| ||||||| |||||| || |||| | | |||||
Sbjct 9868 CATGCTGCGTATTCACTGCATGCAGCATTGGTACAACCTGAGCGACGGTGCCATGGAAGA 9927
Query 9299 TGCGCTCTACGACAGCATCGCGATGCGCGCCTTCGCGGGCATCGACCTGGCGCGCGAGAA 9358
||| || ||||| | | | | |||||| || || | | ||||| |||
Sbjct 9928 TGCCCTGTACGAAATCGCCTCCATGCGCCTGTTTGCCCGATTATCCCTGGATAGCGC--- 9984
Query 9359 CGTGCCGGACGCCACCACGCTGTTGAAATTCCGGCGCCTGCTGGTCGAGCACGCACTGAC 9418
| ||||||| |||||| | |||| ||||| | |||||| | |||| |||| |
Sbjct 9985 CCTGCCGGATCGCACCACCATCATGAATTTCCGCCACCTGCTCGAGCAGCATCAACTGGC 10044
Query 9419 GCGAAAGCTGTTCGACGAGATCGGCATCGA--GTTGTGCGAGCGCGGGC-TGATGATGAA 9475
|| | ||||| | ||| |||| | || ||| || ||| | |||||||
Sbjct 10045 CCGTCAATTGTTCAAGACCATCA--ATCGCTGGCTGGCCGAA-GCAGGCGTCATGATGAC 10101
Query 9476 GGAAGGCACGCTGGTGGATGCGACGATCTTCGAGGCTGCGCCGTCCACGAAGAACGCCGG 9535
||||||| |||||||||| || ||| | ||||| | || || |||||| |
Sbjct 10102 CCAAGGCACTTTGGTGGATGCCACCATCATTGAGGCACCCAGCTCTACCAAGAACAAAGA 10161
Query 9536 GAAGAGCCGTGACCCGGAGATGCATCAGACGAAGAAGGGCAACGACTGGTATTTCGGCAT 9595
| || || || ||||||||||||||||| ||||| ||||| | ||| | || |||||
Sbjct 10162 GCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCACTTTGGCAT 10221
Query 9596 GAAGGCCCATGTCGGCGTCGACGCCGACTCGGGTCTGGTGCATAGCGTGGTCACCACGGC 9655
||||||||| | || ||||| ||| | || ||| || ||| |||||||||| ||
Sbjct 10222 GAAGGCCCACATTGGTGTCGATGCCAAGAGTGGCCTGACCCACAGCCTGGTCACCACCGC 10281
Query 9656 GGCCAACGAGC 9666
|||||||||||
Sbjct 10282 GGCCAACGAGC 10292
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 119027725394256
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |