Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_015265.1 Length=37236 Score E Sequences producing significant alignments: (Bits) Value seq1011 134 3e-27 >seq1011 Length=14871 Score = 134 bits (148), Expect = 3e-27 Identities = 329/491 (67%), Gaps = 11/491 (2%) Strand=Plus/Plus Query 9180 GTGATCGGGCCGTATTACCCGAAGGGCGAGCG-TGGCCGGCCGCCGATTGGCCTGGAACG 9238 || |||| ||||| ||| || |||| || || |||||| | ||| | ||||| Sbjct 9809 GTCATCGAGCCGTTTTATCCCAAGG-CGGGCAATGGCCGACGGCCCTATCCGCTGGAGAC 9867 Query 9239 GATGCTGCGGATCTACTTGCTGCAGCAGTGGTACGGGTTGTCGGACGAAGGGCTTGAAGA 9298 |||||||| || ||| ||||||| |||||| || |||| | | ||||| Sbjct 9868 CATGCTGCGTATTCACTGCATGCAGCATTGGTACAACCTGAGCGACGGTGCCATGGAAGA 9927 Query 9299 TGCGCTCTACGACAGCATCGCGATGCGCGCCTTCGCGGGCATCGACCTGGCGCGCGAGAA 9358 ||| || ||||| | | | | |||||| || || | | ||||| ||| Sbjct 9928 TGCCCTGTACGAAATCGCCTCCATGCGCCTGTTTGCCCGATTATCCCTGGATAGCGC--- 9984 Query 9359 CGTGCCGGACGCCACCACGCTGTTGAAATTCCGGCGCCTGCTGGTCGAGCACGCACTGAC 9418 | ||||||| |||||| | |||| ||||| | |||||| | |||| |||| | Sbjct 9985 CCTGCCGGATCGCACCACCATCATGAATTTCCGCCACCTGCTCGAGCAGCATCAACTGGC 10044 Query 9419 GCGAAAGCTGTTCGACGAGATCGGCATCGA--GTTGTGCGAGCGCGGGC-TGATGATGAA 9475 || | ||||| | ||| |||| | || ||| || ||| | ||||||| Sbjct 10045 CCGTCAATTGTTCAAGACCATCA--ATCGCTGGCTGGCCGAA-GCAGGCGTCATGATGAC 10101 Query 9476 GGAAGGCACGCTGGTGGATGCGACGATCTTCGAGGCTGCGCCGTCCACGAAGAACGCCGG 9535 ||||||| |||||||||| || ||| | ||||| | || || |||||| | Sbjct 10102 CCAAGGCACTTTGGTGGATGCCACCATCATTGAGGCACCCAGCTCTACCAAGAACAAAGA 10161 Query 9536 GAAGAGCCGTGACCCGGAGATGCATCAGACGAAGAAGGGCAACGACTGGTATTTCGGCAT 9595 | || || || ||||||||||||||||| ||||| ||||| | ||| | || ||||| Sbjct 10162 GCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCACTTTGGCAT 10221 Query 9596 GAAGGCCCATGTCGGCGTCGACGCCGACTCGGGTCTGGTGCATAGCGTGGTCACCACGGC 9655 ||||||||| | || ||||| ||| | || ||| || ||| |||||||||| || Sbjct 10222 GAAGGCCCACATTGGTGTCGATGCCAAGAGTGGCCTGACCCACAGCCTGGTCACCACCGC 10281 Query 9656 GGCCAACGAGC 9666 ||||||||||| Sbjct 10282 GGCCAACGAGC 10292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119027725394256