Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_015274.1 Length=56506 Score E Sequences producing significant alignments: (Bits) Value seq663 84.2 8e-12 >seq663 Length=29291 Score = 84.2 bits (92), Expect = 8e-12 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 10413 ATTGAAATTGATGCTGCTTCTAATAATGGGGTAGAAAATGTTCGAAACATTATTGAAGAT 10472 ||||||||||| ||||| || |||||||| || || | |||| | ||| ||| | Sbjct 6049 ATTGAAATTGACGCTGCATCAAATAATGGTGTTGATGAAATTCGTGAAATTCGTGATAAA 6108 Query 10473 TCTAGATACAAGTCTATGGACAGCGAGTTC-AAAGTTTACATCATTGACGAGGTTCATAT 10531 || | ||| | | | || | || ||||||||||||||||| || || ||||| Sbjct 6109 TCAACCTACGCACCAA-GCCGTGCAACTTATAAAGTTTACATCATTGATGAAGTGCATAT 6167 Query 10532 GCTTTCAACCGGAGCATTTAATGCGCTGTTGAAAACATTAGAAGAGCC 10579 ||| || || || || |||||||| || |||||||| || ||||| || Sbjct 6168 GCTATCGACAGGTGCCTTTAATGCTCTTTTGAAAACGTTGGAAGAACC 6215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180688682121696