Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq2084 82.4 9e-11 >seq2084 Length=3937 Score = 82.4 bits (90), Expect = 9e-11 Identities = 103/139 (74%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 22475 TGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGGAGTTCGAG 22534 ||||| ||||||||| ||| ||||| ||||||||||||||||| |||| | |||||| Sbjct 2679 TGGGGGTTTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCAAGGGTTCGAT 2620 Query 22535 TCTCCTATTCTCCA-CTCAATCCTCTTTAGCTCAGC--GGTAGAGCGGTTGACTGTTAAT 22591 || | || |||||| | || | ||||||||| | |||||| ||||| |||| Sbjct 2619 TCCCTTAATCTCCACCACATGGGCCAATAGCTCAGCTGGCTAGAGCACACGACTGATAAT 2560 Query 22592 CAATTGGTCCCTGGTTCGA 22610 | |||| |||||||| Sbjct 2559 CGTGAGGTCGATGGTTCGA 2541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560578876414400