Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq223 129 1e-24 >seq223 Length=82600 Score = 129 bits (142), Expect = 1e-24 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||||||||||||||| || || ||||| || ||||| ||||||||||||||||| || Sbjct 42916 TTACCTGCGAAGATAAGACGCTGCTGGTCAGGTGGAATACCTTCTTTGTCTTGAATCTTA 42975 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || |||||||||||||| || || |||||||| || | ||||| || ||| Sbjct 42976 GTCTTAACATTCTCAATGGTGTCTGACGGCTCTACTTCAAGAGTGATAGTCTTGCCCGTC 43035 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 || || || ||||| | ||||||| Sbjct 43036 AATGTCTTGACGAAAATTTGCATT 43059 Score = 118 bits (130), Expect = 2e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 ||| ||| || ||||| ||||| ||||| || || ||||| |||||||||||||| |||| Sbjct 42629 GCTCACCAGCAAAGATTAGTCGCTGTTGATCAGGCGGAATACCTTCTTTGTCTTGTATTT 42688 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | ||| || || ||||| || |||||| ||||||||| || |||| ||||| || | Sbjct 42689 TAGTCTTTACATTTTCAATAGTATCCGAAGGTTCCACTTCCAGCGTAATTGTCTTGCCAG 42748 Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140 | | |||||| ||||| | ||||| Sbjct 42749 TTAGAGTTTTCACGAATATCTGCAT 42773 Score = 113 bits (124), Expect = 1e-19 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || |||||||||||| || || ||||| || |||||||||||||| || ||||||||||| Sbjct 43773 CTAACCTGCGAAGATTAGACGCTGTTGATCCGGAGGAATGCCTTCCTTATCTTGAATTTT 43832 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | ||| || || ||||| | ||| || || |||||||| |||| || ||||| || Sbjct 43833 ATTCTTCACATTTTCAATTGAGTCAGACGGCTCAACTTCAAGCGTAATGGTTTTTCCCGT 43892 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | ||||| ||||| | |||||| Sbjct 43893 GAGCGTTTTCACGAAAATCTGCATT 43917 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 ||| || || || | ||| || || || || |||||||||||||||||||| |||||| Sbjct 42351 ACCAGCAAAAATTAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGTATTTTTGT 42410 Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 || ||||| ||||||||||| || |||||||| ||||| | || ||||| || | Sbjct 42411 TTTAACGTTTTCAATGGTGTCTGACGGCTCCACTTCGAGGGTGATTGTTTTTCCAGTAAG 42470 Query 195120 AGTTTTTACGAACACTTGCAT 195140 ||||| ||||| | |||||| Sbjct 42471 CGTTTTAACGAATATTTGCAT 42491 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 |||||||| || || | ||| || || ||||| || || || ||||||||||| || || Sbjct 41495 TTACCTGCAAAAATTAATCGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGGATCTTC 41554 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||| || || ||||| |||||| |||||||| | |||| ||||| |||||| Sbjct 41555 GCCTTGACATTTTCTATGGTATCCGAAGGCTCCACTTCCAAAGTAATAGTCTTCCCTGTC 41614 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 | ||||| ||||| | |||||| Sbjct 41615 AGCGTTTTCACGAATATCTGCATT 41638 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| || || || || || || || || |||||||| ||||||||||| || || || Sbjct 41214 TACCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGTATCTTGG 41273 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 ||| ||||| || || ||||||||| |||||||| || || | || || ||||||| Sbjct 41274 CCTTCACGTTATCGATAGTGTCCGAAGGCTCCACTTCGAGAGTTATAGTTTTGCCTGTCA 41333 Query 195119 AAGTTTTTACGAACACTTGCATT 195141 | ||||| || || | ||||||| Sbjct 41334 ATGTTTTGACAAATATTTGCATT 41356 Score = 93.3 bits (102), Expect = 9e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || ||||| ||||| || || |||||||| || ||||| || ||||||||||| Sbjct 43196 CTTACCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATTCCTTCCTTATCTTGAATTTT 43255 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||| |||||||| || || || ||||| || |||| || || || || Sbjct 43256 CGTCTTCACGTTATCAATGGTATCGGACGGCTCAACTTCCAGCGTAATAGTTTTGCCGGT 43315 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | ||||| Sbjct 43316 TAGCGTTTTCACAAATATCTGCAT 43339 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| ||||| || || || |||||||| || || || || || || ||||||||||| Sbjct 41783 TTACCGGCGAAAATCAGGCGCTGTTGGTCGGGTGGTATCCCCTCCTTATCTTGAATTTTC 41842 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| |||||||| || || ||||| || ||||| ||||| | || || || || Sbjct 41843 GTCTTTACGTTCTCGATCGTATCCGACGGCTCGACTTCCAGGGTGATTGTTTTGCCAGTT 41902 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | |||||| || || | |||||| Sbjct 41903 AGAGTTTTCACAAAGATTTGCAT 41925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109422521491652