Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq223 129 1e-24
>seq223
Length=82600
Score = 129 bits (142), Expect = 1e-24
Identities = 115/144 (80%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
||||||||||||||||| || || ||||| || ||||| ||||||||||||||||| ||
Sbjct 42916 TTACCTGCGAAGATAAGACGCTGCTGGTCAGGTGGAATACCTTCTTTGTCTTGAATCTTA 42975
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
||| || |||||||||||||| || || |||||||| || | ||||| || |||
Sbjct 42976 GTCTTAACATTCTCAATGGTGTCTGACGGCTCTACTTCAAGAGTGATAGTCTTGCCCGTC 43035
Query 195118 AAAGTTTTTACGAACACTTGCATT 195141
|| || || ||||| | |||||||
Sbjct 43036 AATGTCTTGACGAAAATTTGCATT 43059
Score = 118 bits (130), Expect = 2e-21
Identities = 113/145 (78%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055
||| ||| || ||||| ||||| ||||| || || ||||| |||||||||||||| ||||
Sbjct 42629 GCTCACCAGCAAAGATTAGTCGCTGTTGATCAGGCGGAATACCTTCTTTGTCTTGTATTT 42688
Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115
| ||| || || ||||| || |||||| ||||||||| || |||| ||||| || |
Sbjct 42689 TAGTCTTTACATTTTCAATAGTATCCGAAGGTTCCACTTCCAGCGTAATTGTCTTGCCAG 42748
Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140
| | |||||| ||||| | |||||
Sbjct 42749 TTAGAGTTTTCACGAATATCTGCAT 42773
Score = 113 bits (124), Expect = 1e-19
Identities = 112/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|| |||||||||||| || || ||||| || |||||||||||||| || |||||||||||
Sbjct 43773 CTAACCTGCGAAGATTAGACGCTGTTGATCCGGAGGAATGCCTTCCTTATCTTGAATTTT 43832
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
| ||| || || ||||| | ||| || || |||||||| |||| || ||||| ||
Sbjct 43833 ATTCTTCACATTTTCAATTGAGTCAGACGGCTCAACTTCAAGCGTAATGGTTTTTCCCGT 43892
Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141
| ||||| ||||| | ||||||
Sbjct 43893 GAGCGTTTTCACGAAAATCTGCATT 43917
Score = 105 bits (116), Expect = 1e-17
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059
||| || || || | ||| || || || || |||||||||||||||||||| ||||||
Sbjct 42351 ACCAGCAAAAATTAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGTATTTTTGT 42410
Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119
|| ||||| ||||||||||| || |||||||| ||||| | || ||||| || |
Sbjct 42411 TTTAACGTTTTCAATGGTGTCTGACGGCTCCACTTCGAGGGTGATTGTTTTTCCAGTAAG 42470
Query 195120 AGTTTTTACGAACACTTGCAT 195140
||||| ||||| | ||||||
Sbjct 42471 CGTTTTAACGAATATTTGCAT 42491
Score = 102 bits (112), Expect = 2e-16
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|||||||| || || | ||| || || ||||| || || || ||||||||||| || ||
Sbjct 41495 TTACCTGCAAAAATTAATCGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGGATCTTC 41554
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
|||||| || || ||||| |||||| |||||||| | |||| ||||| ||||||
Sbjct 41555 GCCTTGACATTTTCTATGGTATCCGAAGGCTCCACTTCCAAAGTAATAGTCTTCCCTGTC 41614
Query 195118 AAAGTTTTTACGAACACTTGCATT 195141
| ||||| ||||| | ||||||
Sbjct 41615 AGCGTTTTCACGAATATCTGCATT 41638
Score = 100 bits (110), Expect = 6e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058
|||| || || || || || || || || |||||||| ||||||||||| || || ||
Sbjct 41214 TACCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGTATCTTGG 41273
Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118
||| ||||| || || ||||||||| |||||||| || || | || || |||||||
Sbjct 41274 CCTTCACGTTATCGATAGTGTCCGAAGGCTCCACTTCGAGAGTTATAGTTTTGCCTGTCA 41333
Query 195119 AAGTTTTTACGAACACTTGCATT 195141
| ||||| || || | |||||||
Sbjct 41334 ATGTTTTGACAAATATTTGCATT 41356
Score = 93.3 bits (102), Expect = 9e-14
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|||||| || ||||| ||||| || || |||||||| || ||||| || |||||||||||
Sbjct 43196 CTTACCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATTCCTTCCTTATCTTGAATTTT 43255
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||| ||||| |||||||| || || || ||||| || |||| || || || ||
Sbjct 43256 CGTCTTCACGTTATCAATGGTATCGGACGGCTCAACTTCCAGCGTAATAGTTTTGCCGGT 43315
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
| ||||| || || | |||||
Sbjct 43316 TAGCGTTTTCACAAATATCTGCAT 43339
Score = 91.5 bits (100), Expect = 3e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
||||| ||||| || || || |||||||| || || || || || || |||||||||||
Sbjct 41783 TTACCGGCGAAAATCAGGCGCTGTTGGTCGGGTGGTATCCCCTCCTTATCTTGAATTTTC 41842
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
||| |||||||| || || ||||| || ||||| ||||| | || || || ||
Sbjct 41843 GTCTTTACGTTCTCGATCGTATCCGACGGCTCGACTTCCAGGGTGATTGTTTTGCCAGTT 41902
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
| |||||| || || | ||||||
Sbjct 41903 AGAGTTTTCACAAAGATTTGCAT 41925
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109422521491652
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |