Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_015457.1
Length=165919
Score E
Sequences producing significant alignments: (Bits) Value
seq732 86.0 7e-12
>seq732
Length=24842
Score = 86.0 bits (94), Expect = 7e-12
Identities = 200/298 (67%), Gaps = 8/298 (3%)
Strand=Plus/Minus
Query 41640 GATGTCAGGATACATTCTTTTGCTTGCGCATTCTAAAGCAAGCTGCTTAATATCATAGTT 41699
||| || |||||||| | ||||||||||| || | || ||||| || || || |||||
Sbjct 448 GATATCCGGATACATGCGCTTGCTTGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTT 389
Query 41700 CGGATCGTCTTTATAAAGATTAACACCTTCTTCAA-CGAACATAACAAGTTTAGGGAAAA 41758
||||||| |||| | | | || | ||| || || || | | || ||||| ||||| |
Sbjct 388 CGGATCGCCTTTTTTATGGTTCAGACCATCGCGAATCGCA-AACACCAGTTTCGGGAACA 330
Query 41759 TAGGAGTTATCCCGTCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAA 41818
| |||| | | || ||| || ||| ||||| || ||| || | || |||||
Sbjct 329 CCGCAGTTTTACGGTTTTTACCGAGGCCTGCGATACGGTTACGCAGGATAGATTCCTGAA 270
Query 41819 TCATTCG---TTCAGTCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGCGTTT 41875
||| || ||| |||| || ||| |||||| || |||||||| ||||| |
Sbjct 269 TCAGGCGCGATTC---CCAGCTGGTGCCCAGACCAAAACCAAAGGTTACAAACGGCGTCT 213
Query 41876 GCCCGTTTGAACTAAAAAGAGTATTTACTTCATATTCATAAGCTTGAAATGCATCGTA 41933
| ||||| | | || || |||||||| || || | || || ||||||||
Sbjct 212 GACCGTTGGCGGTGTGCAGGGTGTTTACTTCGTACTCCAGCGACTGGAAGGCATCGTA 155
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 530785224275040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |