Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq18 145 9e-30 >seq18 Length=263653 Score = 145 bits (160), Expect = 9e-30 Identities = 485/757 (64%), Gaps = 57/757 (8%) Strand=Plus/Minus Query 18646 TCATTAGAATT---CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAA 18702 ||||| |||| |||||| || ||||| |||||| | || || ||||||||||| Sbjct 150728 TCATTGTAATTGCCCATTACGCCGCACTTTTGGTATTCGCCCACCTTTCTTTCAAAGAAA 150669 Query 18703 TTAGTTTTTCCCTCTAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATAT 18762 || || || || || | ||||| ||||||||| || || ||||| | |||| ||| Sbjct 150668 TTGGTCTTACCTTCAAGCGATATCATTTCCATAAAGTCGAACGGATTCTCAGCATTGTAT 150609 Query 18763 AtttttttGAATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTC 18822 || || | | | | || || | | | | ||| || || ||| || ||| | | Sbjct 150608 ATCTTGTCGCAGTCCAACTCAACCAACAAACGATCGGCCACGTATTCTATGTATTGGCAC 150549 Query 18823 ATCATATCACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGT 18882 |||| | |||||||| || || | || ||||| ||||| || ||||| || ||||| Sbjct 150548 ATCAGTACGCAATTCATGCCGATCAGGTTGACAGGAAGTGCCTCGGTAAGGAACTCTTGC 150489 Query 18883 TCTATATTTACTGCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGA 18942 || || || |||||| ||| || | | | ||||| | | | || | Sbjct 150488 TCAATGGCGACCGCCTCTCGTATGATCTGCTCGATGCGATCTTTACTGGTCTTGTGTTTC 150429 Query 18943 AGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCT----------CG---TC 18989 | || ||| | |||||||||||||||||| || || |||| || | Sbjct 150428 AAGTGAGAAAATAACAAACATGCAAAATCACAGTGCAGACCCTAAAATGAATGCGAAAAC 150369 Query 18990 T----------------CTACTTATCAAT---TCAT-----TAGA-------------AA 19012 | ||| | | || | |||| ||| || Sbjct 150368 TTTAAAAATTGCACAGCCTAATGAGCAGTACCTCATCTCGGGAGATGAGCTCATTGCTAA 150309 Query 19013 ATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAG 19072 | || | || ||||| || || | ||| |||| |||||| || |||||||| ||||| Sbjct 150308 AAGTGAGCCCTGGCATGAGACCACGTTTCTTTAGCCAGAAAATCGAAGCAAAGCTTCCAG 150249 Query 19073 AAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCAT 19132 ||||||||||||| || || || ||||| || || |||| |||| | | | | | | Sbjct 150248 AAAAGAATATACCCTCGACGGCGGCAAATGCTACAAGTCGATCTC--TGAATGGTGACTT 150191 Query 19133 TAT-TATG-AATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTC 19190 | | | | |||||| || |||||||| |||||||| || || ||||| || ||||| Sbjct 150190 TTTGTCCGCTATCCATCGTAGAGCCCAATCGGCCTTCTTCTTAACGCATGGAATGGTCTC 150131 Query 19191 TATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAA 19250 || | || || || | || || || ||||| || ||| | || |||| | Sbjct 150130 AATGGCGTTGAACAGGTGGTGGCGTTCCGCTTCATCTTGAATATACGTGTCAATCAGCAG 150071 Query 19251 ACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGC 19310 ||| ||||| || || |||||||| |||||||| || || || |||||||| || | || Sbjct 150070 ACTATACATCTCCGAGTGAATATTCTCTATAGCAATTTGGAAGCCGTAAAAGCAGCGAGC 150011 Query 19311 TTCTGTTATCTGTACTTCACTACAAAATCTTTCGACC 19347 ||||| | ||| | ||| | | |||| | ||| ||| Sbjct 150010 CTCTGTCACCTGAATTTCCCGAGAAAAGCGTTCAACC 149974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562079598447840