Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq195 150 1e-30 seq223 98.7 8e-15 >seq195 Length=92702 Score = 150 bits (166), Expect = 1e-30 Identities = 387/584 (66%), Gaps = 4/584 (1%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||| | || || ||||| || || || || ||||| ||||| || | || |||| || Sbjct 11991 GCTGTTGGAATTGATTTGGGTACTACGTACAGTTGCGTTGGCGTATTTCAGCATGGAAAG 11932 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || || ||||| || || || ||| ||||||| || |||||| |||| ||| Sbjct 11931 GTGGAGATAATAGCCAACGACCAGGGCAACCGAACTACGCCGAGCTATGTTGCTTTTACG 11872 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || || | | || ||||| || || |||| | || ||||| ||| Sbjct 11871 GACACGGAGAGGCTGATCGGCGATGCCGCCAAGAATCAGGTGGCTTTAAATCCCCACAAC 11812 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || |||| || || || || | || || || | | |||| || |||| ||| | Sbjct 11811 ACCGTTTTCGACGCGAAGCGACTGATCGGGCGACGATACGATGACTCCGCTGTGCAGTCT 11752 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAA-TGTTTCTGGAAAACCTTATATTGAAGC 550290 || |||||||||||||||||| || || ||| || | || || || | ||| | | Sbjct 11751 GACATGAAGCATTGGCCTTTC-AAGGTGATAAGTGATGGAGGCAAGCCAAAGATTCAGGT 11693 Query 550291 TACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350 | |||| || ||| | || ||| || | ||||||| | | Sbjct 11692 GGAATACAAAGGCGAGACGAAGATGTTTACTCCCGAAGAAGTCAGCGCTATGGTGCTTGT 11633 Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGGATGCAGTAATAA 550409 ||||||||| | || || |||| | |||| ||| | || | |||||| || || | Sbjct 11632 GAAAATGAAGGAGACGGCGGAAGCTTAT-TTGGGCAAAACCGTGAAGGATGCCGTCATCA 11574 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 |||| || ||||| || ||||| || || | || || || ||||| || || ||| Sbjct 11573 CTGTTCCGGCATACTTCAATGATTCTCAGAGGCAGGCAACGAAAGACGCCGGTACCATTT 11514 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 ||||| | ||||| ||||| |||||||| ||||| |||||||||||| | || || || | Sbjct 11513 CTGGATTGAATGTCCTTCGAATTATCAACGAACCAACTGCTGCTGCAATCGCTTACGGCC 11454 Query 550530 TTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGAT 550573 |||| || | | | ||||| ||||| ||||| || ||| Sbjct 11453 TTGACAAGAAAGGTACTGGAGAACGAAATGTGCTCATTTTCGAT 11410 >seq223 Length=82600 Score = 98.7 bits (108), Expect = 8e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| | || ||||||||||| ||||| |||||||| ||||| |||||| | Sbjct 42352 CCAGCAAAAATTAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGTATTTTTGTT 42411 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || ||||| || || | | | || |||||| || | ||||| |||||||| Sbjct 42412 TTAACGTTTTCAATGGTGTCTG-ACGGCTCCACTTCGAGGGTGATTGTTTTTCCAGTAAG 42470 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||||||||||| |||||||| Sbjct 42471 CGTTTTAACGAATATTTGCAT 42491 Score = 87.8 bits (96), Expect = 1e-11 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || |||||||| || |||| |||||||| ||||| |||||||| |||||||||||||| Sbjct 43197 TTACCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATTCCTTCCTTATCTTGAATTTTC 43256 Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTA 563451 || || ||||| ||||| | | | ||| || |||| |||||| || || Sbjct 43257 GTCTTCACGTTATCAATGGTATCGGACGGCTCAACTTCCAGCGTAATAGTTTTGCCGGTT 43316 Query 563452 AGAGTTTTAACGAAAATTTGCAT 563474 || ||||| || || || ||||| Sbjct 43317 AGCGTTTTCACAAATATCTGCAT 43339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029076211976440