Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq195 150 1e-30
seq223 98.7 8e-15
>seq195
Length=92702
Score = 150 bits (166), Expect = 1e-30
Identities = 387/584 (66%), Gaps = 4/584 (1%)
Strand=Plus/Minus
Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051
||| | || || ||||| || || || || ||||| ||||| || | || |||| ||
Sbjct 11991 GCTGTTGGAATTGATTTGGGTACTACGTACAGTTGCGTTGGCGTATTTCAGCATGGAAAG 11932
Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111
|| || || || ||||| || || || ||| ||||||| || |||||| |||| |||
Sbjct 11931 GTGGAGATAATAGCCAACGACCAGGGCAACCGAACTACGCCGAGCTATGTTGCTTTTACG 11872
Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171
|| || || | | || ||||| || || |||| | || ||||| |||
Sbjct 11871 GACACGGAGAGGCTGATCGGCGATGCCGCCAAGAATCAGGTGGCTTTAAATCCCCACAAC 11812
Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231
|| |||| || || || || | || || || | | |||| || |||| ||| |
Sbjct 11811 ACCGTTTTCGACGCGAAGCGACTGATCGGGCGACGATACGATGACTCCGCTGTGCAGTCT 11752
Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAA-TGTTTCTGGAAAACCTTATATTGAAGC 550290
|| |||||||||||||||||| || || ||| || | || || || | ||| | |
Sbjct 11751 GACATGAAGCATTGGCCTTTC-AAGGTGATAAGTGATGGAGGCAAGCCAAAGATTCAGGT 11693
Query 550291 TACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350
| |||| || ||| | || ||| || | ||||||| | |
Sbjct 11692 GGAATACAAAGGCGAGACGAAGATGTTTACTCCCGAAGAAGTCAGCGCTATGGTGCTTGT 11633
Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGGATGCAGTAATAA 550409
||||||||| | || || |||| | |||| ||| | || | |||||| || || |
Sbjct 11632 GAAAATGAAGGAGACGGCGGAAGCTTAT-TTGGGCAAAACCGTGAAGGATGCCGTCATCA 11574
Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469
|||| || ||||| || ||||| || || | || || || ||||| || || |||
Sbjct 11573 CTGTTCCGGCATACTTCAATGATTCTCAGAGGCAGGCAACGAAAGACGCCGGTACCATTT 11514
Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529
||||| | ||||| ||||| |||||||| ||||| |||||||||||| | || || || |
Sbjct 11513 CTGGATTGAATGTCCTTCGAATTATCAACGAACCAACTGCTGCTGCAATCGCTTACGGCC 11454
Query 550530 TTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGAT 550573
|||| || | | | ||||| ||||| ||||| || |||
Sbjct 11453 TTGACAAGAAAGGTACTGGAGAACGAAATGTGCTCATTTTCGAT 11410
>seq223
Length=82600
Score = 98.7 bits (108), Expect = 8e-15
Identities = 108/141 (77%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| |||||||| | || ||||||||||| ||||| |||||||| ||||| |||||| |
Sbjct 42352 CCAGCAAAAATTAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGTATTTTTGTT 42411
Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453
|| || ||||| || || | | | || |||||| || | ||||| ||||||||
Sbjct 42412 TTAACGTTTTCAATGGTGTCTG-ACGGCTCCACTTCGAGGGTGATTGTTTTTCCAGTAAG 42470
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
||||||||||| ||||||||
Sbjct 42471 CGTTTTAACGAATATTTGCAT 42491
Score = 87.8 bits (96), Expect = 1e-11
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391
|| |||||||| || |||| |||||||| ||||| |||||||| ||||||||||||||
Sbjct 43197 TTACCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATTCCTTCCTTATCTTGAATTTTC 43256
Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTA 563451
|| || ||||| ||||| | | | ||| || |||| |||||| || ||
Sbjct 43257 GTCTTCACGTTATCAATGGTATCGGACGGCTCAACTTCCAGCGTAATAGTTTTGCCGGTT 43316
Query 563452 AGAGTTTTAACGAAAATTTGCAT 563474
|| ||||| || || || |||||
Sbjct 43317 AGCGTTTTCACAAATATCTGCAT 43339
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029076211976440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |