Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_016158.1
Length=49576
Score E
Sequences producing significant alignments: (Bits) Value
seq1918 526 7e-145
>seq1918
Length=4625
Score = 526 bits (582), Expect = 7e-145
Identities = 937/1355 (69%), Gaps = 32/1355 (2%)
Strand=Plus/Plus
Query 5780 AATACTTTGACTGGCCTGATCCCGACCATTTATACGGCGCTTAACCGCGTTTCACGTGAG 5839
||||| |||| || |||||||||| |||||||| || || | || || ||||||
Sbjct 1036 AATACCCTGACCGGGTTGATCCCGACTATTTATACCGCCCTGGATGTTGTATCCCGTGAG 1095
Query 5840 CAGGTAGGTTTTATCCCGGCAGTGGCTCGTAACGCTAAGGCCGATGCCGCGGCCAAAGAC 5899
||||||||||||||||| || || || ||||| || || || ||||| || |||||
Sbjct 1096 CAGGTAGGTTTTATCCCTGCGGTAGCAAAAAACGCAAAAGCTGACGCCGCAGCAAAAGAT 1155
Query 5900 CAAACCGTGACCGCACCGGTAGCACCAAAAACCACCACCGTTGATATCACTCCGGCGGCA 5959
|| || || ||||| || || || || | | | |||| |||||| |||| | |
Sbjct 1156 CAGACGGTAACCGCGCCAGTTGCGCCTGAGGCGAAAACCGAAGATATCGTACCGGGGCCG 1215
Query 5960 ACCGCGCCAAACGACGGTGATCAGAACATTGGTACCGTGGATGTCAAAATCACCAAATCA 6019
| || || || ||||||||| || ||||| || || ||||| ||||| || |||||
Sbjct 1216 TCAGCTCCGAATACCGGTGATCAAAATATTGGCACTGTTGATGTAAAAATTACTAAATCC 1275
Query 6020 AAAATGGCTCCGGTCAAATGGAACGGTGAAGAACAGTTGGCGATGGGGCCATCAGGTAAC 6079
|||||||| ||||| |||||||| ||||||||||| |||| | || || ||||| |
Sbjct 1276 AAAATGGCACCGGTTAAATGGAATGGTGAAGAACAACTGGCTCTTGGCCCTTCAGGGACT 1335
Query 6080 TACGACGTTATCCTTGCCGATCAGTTTTCTCAGGCCTTCCGCGCGCTGAGCAACGAAATG 6139
||| || || || || |||||||| ||||| || ||||| || ||||| |
Sbjct 1336 TACAACACCATTCTGGCTGATCAGTTCAAGCAGGCTTTTCGCGCCCTTGCAAACGAGGTT 1395
Query 6140 GACGCAGACCTGGCTGCGCTGTTCTACAAATCTTCCCGTGCAGTTGGTTCACCAAAAGAG 6199
|| || || || | |||| ||| | | ||||||| || || || | ||
Sbjct 1396 GAGGCTGATCTTGGTGCGTTGTATTTCGGTGCTTCCCGCGCCGTGGGAACCGCAGGGACA 1455
Query 6200 ACGCCATTCAGCATTAAAGACGATCTGTCTGATGCAGCGCTGGCGCGTCAGATTTTAGTG 6259
||||| || | ||||||| ||||| |||||||| || ||||| |||||| || | | |
Sbjct 1456 ACGCCGTTTGGTGTTAAAGATGATCTTTCTGATGCTGCTCTGGCTCGTCAGGTTCTGGAG 1515
Query 6260 GATAACGGTGCACCGACTACCGACATGCGCATGGTGCTGGGCGGCGAAGCGATGGCCTCA 6319
|||||||| |||||||| ||||| ||| |||||||| ||| | || || | || |
Sbjct 1516 GATAACGGCGCACCGACAACCGATCTGCAGATGGTGCTTGGCTCCACTGCCATTG-CTAA 1574
Query 6320 ATT-CGCGGAAAACAGTCGGTTCTGTTCAAAGCGAACGAAGCAGGTACCGATCAGCTTCT 6378
|| |||||||||||||| || |||| |||| ||| ||| | || || || ||||| ||
Sbjct 1575 TTTGCGCGGAAAACAGTCTGTATTGTTTAAAGTGAATGAATCCGGCACTGAACAGCTACT 1634
Query 6379 GCGTGAAGGTATTATTGGCCGCGTGATGGGCTTTAACCTTCACGAATCCGCCAACATCAA 6438
|||||| || | | || || || ||| || || ||||| || || | ||
Sbjct 1635 GCGTGAGGGCGTGTTGGGGCGTCTGGAGGGATTCAATATTCACAGTTCGGCAGGTGTGAA 1694
Query 6439 GCGCACAGCGAAAAG-TACGGCGGCGGGCTATACGGTCAACGGCGCGAAGCAGGAAGGCG 6497
|| | || ||| | | | || | || ||| || || || | ||| | |||||||
Sbjct 1695 ACG-AGCGCCAAAGGTTGCTGCAACTGGTTATCTCGTGAATGGAGAGAAAAAAGAAGGCG 1753
Query 6498 ATATCATCATCGCTATCTCCACAGGTACCGGTGGTATCGCAGCAGGCACTGCGGTTAAGT 6557
|| | | || | || || ||| | || |||| | ||||| |||| ||
Sbjct 1754 ATGTTCTTATTTCCATTGATACTGGTTCGGGGAGTATTTCTGCAGGTCAGATTGTTACGT 1813
Query 6558 TCGATGGCGACTTTAACCAGTATCTGGTTGTGGCCTCTACGGCC-TCAAGC--ATCACTA 6614
||| ||| || || |||||| |||||||| | || || ||| | || |||
Sbjct 1814 TCGCTGGTGATCCGAATCAGTAT---GTTGTGGCAGCAGCGACCAGCAATCTGATTACTC 1870
Query 6615 TCGCAGCACCGGGACTGCGCCAGGATCTGGCAGACCAGACAGCTATTACCGTTGTGAGCG 6674
| ||||| || |||||||| ||||||||||| || | || || || || ||||| | |
Sbjct 1871 TTGCAGCGCCCGGACTGCGTCAGGATCTGGCCGATGATACTGCCATCACAGTTGTTGGGG 1930
Query 6675 AATTCACACCAAACATGGCATTCGACCGCAATGCTTTCCTGCTGGCGTGCCGCACCCCGG 6734
|| || |||| ||||| || || ||||| || || |||||||| | ||| || ||||
Sbjct 1931 CCTTTACTGCAAATATGGCGTTTGATCGCAACGCGTTTCTGCTGGCATCCCGTACTCCGG 1990
Query 6735 CAATGCCAAAAGGCGGAGACACCGCCGACGATGTGATGAATGTTACCGACCCGGTGTCAG 6794
||||||| |||| || || | || || ||||| ||||||||||| |||||| | ||||
Sbjct 1991 CAATGCCGGAAGGTGGCGATAATGCTGATGATGTAATGAATGTTACGGACCCGATTTCAG 2050
Query 6795 GCATCACCTTCCAGATCGCGCTCTATCGCCAGTACCGTCAGGTGCGTTACGAGGTTGGCG 6854
| || || |||||||| || || ||||| ||||| || |||||||| || || |||||
Sbjct 2051 GGATTACGTTCCAGATTGCACTGTATCGTCAGTATCGCCAGGTGCGCTATGAAGTTGGAC 2110
Query 6855 TGGCATGGGGTGTGGCATCTGTTCAGCCTGAACACTCCACCATCATCATGGGTTAACC-- 6912
||||||||||||| |||| || |||| | ||| | || | |||||| |
Sbjct 2111 TGGCATGGGGTGTTTCATCAGTGAAGCCGGCACATGGTTGTCTGATTCTTGGTTAAACAT 2170
Query 6913 -CAgggggggCTTCGGCCCCTTTGTTATTCAGGAGGCCCAATGGCCGGATTAACCAAAGA 6971
|| |||||||||||||| || ||| | || || | |||||||||||||| |||||
Sbjct 2171 TCAAACGGGGCTTCGGCCCCATTTTTAAT--GGGGGGCATATGGCCGGATTAACTAAAGA 2228
Query 6972 GCAGCGCGCGCAGCGTGA---CGCGGAAAAGCTTGCAGCTCAGCAGGGTATTGAGCTGGT 7028
||| | || |||||||| ||| |||| | | || |||||| | ||
Sbjct 2229 GCAAAGAGCACAGCGTGAAGCCGCACAAAA------AACGCA------AATTGAGTTAGT 2276
Query 7029 GGTCATGGTGCGTGACACCCCAGA-GTTCCCCGGCGGCCCGCTGAGCGCTGAGGTTCACC 7087
||| |||||| || |||| ||| ||||||| || | |||| | ||||| |
Sbjct 2277 GGTTATGGTGACCGA-TTATCAGATGTTTCCCGGCGCACCAACTATCGCTAATGTTCATC 2335
Query 7088 ATGACGAAGTGGATAACTGGCAGGCGCTGGACTGG 7122
||| ||||| || |||||| |||| ||| ||||
Sbjct 2336 CTGATGAAGTTGACAACTGGAAGGCTATGGGCTGG 2370
Score = 223 bits (246), Expect = 1e-53
Identities = 479/710 (67%), Gaps = 12/710 (2%)
Strand=Plus/Plus
Query 5053 TGCCTGTGTACATCCATGATGACGGCAAAGAGATCCCGTTCGACGCAGCCGCAG-CGATG 5111
|||| || || | || || || || ||||| || ||||| ||| |||| | |||
Sbjct 225 TGCCAGTTTATGTGCACGACGATGGTAAAGAAATTGGCTTCGATGCA-CCGCTGGCGACA 283
Query 5112 ACCAAAATCACCTCCCTGAACGGTGAAGCTAAAACTCACCGTGAAGCGAAGGAGGCGGCG 5171
| ||||| || || || || || || |||| ||| || || || || || ||
Sbjct 284 AAAAAAATTACAGAGCTTAATGGCGAGGCAAAAAATCATCGCCTGGCTAAAGAAGCTGCA 343
Query 5172 GAAGCCAGTCTCGCGAAATTCTCTGGCATCACCGACCCGGCCAAGGCGCTCGAAGCCCTG 5231
|| | | || || || || | | ||| |||||| |||||| |||| || |||
Sbjct 344 GAGGAAAAACTGGCTAAGTTTGCCGCGATCGAAGACCCGAAGAAGGCGATCGAGGCACTG 403
Query 5232 GAGATGATGACCAAAATCGACCAGAAAAAACTGATCGATGCTGGTGCCGTTGACCAGGTA 5291
|| ||| || | ||||||||||||||||| ||| ||||||| || |||||||||||
Sbjct 404 GAAATGCTGTCAAAAATCGACCAGAAAAAGCTGCTCGATGCGGGACAGGTTGACCAGGTT 463
Query 5292 AAGGCGGAGATCACCAAAGTTTTCCAACAGCAACTCGAAGAGGCGAACAGCAAGACCC-- 5349
||||| || || || ||| ||| || |||||| | || || | || ||||| | |
Sbjct 464 AAGGCAGAAATTACGAAAAATTTTCAGCAGCAATTAGATGAAG--AAAAGCAACGCTCTC 521
Query 5350 AGCAACTGGAAACTCAACTCTACGACGAGATGATCGGCGGCCGCTTCGGTGGCTCCAAAT 5409
|| ||||| | || || ||||| ||||| ||||| | || | || || ||||
Sbjct 522 AGATGCTGGAGAAGCAGCTTTACGATTCTATGATTGGCGGTAGTTTTGCGGGTTCAAAAT 581
Query 5410 TCATTTCAGAGAAGATGGCGATCCCGGCTGAGTTCGTGCGTTCGTACTTCGGGCAGAACT 5469
||| | || || || ||||||||||| || || | | | |||||||||| |
Sbjct 582 ATATTGCCGATAAAATTGCGATCCCGGCAGATTTATTACAAGCCCGCTTCGGGCAGGCAT 641
Query 5470 TCAAAATCGAAGACGGCAAGGTCGTGGCCTTCGACGGTCAGGGCAATAAGGTGTTCTCTC 5529
||||| | ||||| || | | |||| || | |||| | ||||| || | | || |
Sbjct 642 TCAAAGTGGAAGAAGGGAGGATCGTTGCTTATGACGCTTCCGGCAACAAAATTTATTCCC 701
Query 5530 GCACCAAGCCTGGCGAGCTGGCTAGCTTCGACGAAGCGCTGGAGTCACTGGTCGAGTCGC 5589
|| | ||||||||||| ||||| || || || |||||||||| || |||||
Sbjct 702 GCGCGAAGCCTGGCGAACTGGCGCAGTTTGATGAGGCGCTGGAGTTCCTTGTCGAAAATT 761
Query 5590 ATCCGCAGAAAGATTACATCCTCAAAGCGTCCGGTAACAGCGGCGGCGGTTCTCACCAGT 5649
| || |||||||| |||||||| ||||| || |||| |||||||| || | | |
Sbjct 762 ACCCTCAGAAAGACTACATCCTGAAAGCCAGTGGCAACAATGGCGGCGGCTCCCGTCCGA 821
Query 5650 CGCAGCACCAGGCCGGGCAAAAAACCATGAAACGCGATGCGTTTGATGCATTACCTCCAG 5709
| ||||| | || || ||||| ||||||||| ||| ||||||||| | | |
Sbjct 822 CACAGCATGATATTGGTCAGAAAACGATGAAACGCTCTGCTTTTGATGCACTGGATGTTG 881
Query 5710 CAG---AGCAACAGGCTGTGATTGGCGGCGGCACAAGCATCGTTGATTAA 5756
||| ||||| | || ||| | ||| |||| ||||||||||||
Sbjct 882 CAGGTAAGCAAAACGCATTGAAAGACGGTATCACA---ATCGTTGATTAA 928
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 158513776562736
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |