Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_016158.1 Length=49576 Score E Sequences producing significant alignments: (Bits) Value seq1918 526 7e-145 >seq1918 Length=4625 Score = 526 bits (582), Expect = 7e-145 Identities = 937/1355 (69%), Gaps = 32/1355 (2%) Strand=Plus/Plus Query 5780 AATACTTTGACTGGCCTGATCCCGACCATTTATACGGCGCTTAACCGCGTTTCACGTGAG 5839 ||||| |||| || |||||||||| |||||||| || || | || || |||||| Sbjct 1036 AATACCCTGACCGGGTTGATCCCGACTATTTATACCGCCCTGGATGTTGTATCCCGTGAG 1095 Query 5840 CAGGTAGGTTTTATCCCGGCAGTGGCTCGTAACGCTAAGGCCGATGCCGCGGCCAAAGAC 5899 ||||||||||||||||| || || || ||||| || || || ||||| || ||||| Sbjct 1096 CAGGTAGGTTTTATCCCTGCGGTAGCAAAAAACGCAAAAGCTGACGCCGCAGCAAAAGAT 1155 Query 5900 CAAACCGTGACCGCACCGGTAGCACCAAAAACCACCACCGTTGATATCACTCCGGCGGCA 5959 || || || ||||| || || || || | | | |||| |||||| |||| | | Sbjct 1156 CAGACGGTAACCGCGCCAGTTGCGCCTGAGGCGAAAACCGAAGATATCGTACCGGGGCCG 1215 Query 5960 ACCGCGCCAAACGACGGTGATCAGAACATTGGTACCGTGGATGTCAAAATCACCAAATCA 6019 | || || || ||||||||| || ||||| || || ||||| ||||| || ||||| Sbjct 1216 TCAGCTCCGAATACCGGTGATCAAAATATTGGCACTGTTGATGTAAAAATTACTAAATCC 1275 Query 6020 AAAATGGCTCCGGTCAAATGGAACGGTGAAGAACAGTTGGCGATGGGGCCATCAGGTAAC 6079 |||||||| ||||| |||||||| ||||||||||| |||| | || || ||||| | Sbjct 1276 AAAATGGCACCGGTTAAATGGAATGGTGAAGAACAACTGGCTCTTGGCCCTTCAGGGACT 1335 Query 6080 TACGACGTTATCCTTGCCGATCAGTTTTCTCAGGCCTTCCGCGCGCTGAGCAACGAAATG 6139 ||| || || || || |||||||| ||||| || ||||| || ||||| | Sbjct 1336 TACAACACCATTCTGGCTGATCAGTTCAAGCAGGCTTTTCGCGCCCTTGCAAACGAGGTT 1395 Query 6140 GACGCAGACCTGGCTGCGCTGTTCTACAAATCTTCCCGTGCAGTTGGTTCACCAAAAGAG 6199 || || || || | |||| ||| | | ||||||| || || || | || Sbjct 1396 GAGGCTGATCTTGGTGCGTTGTATTTCGGTGCTTCCCGCGCCGTGGGAACCGCAGGGACA 1455 Query 6200 ACGCCATTCAGCATTAAAGACGATCTGTCTGATGCAGCGCTGGCGCGTCAGATTTTAGTG 6259 ||||| || | ||||||| ||||| |||||||| || ||||| |||||| || | | | Sbjct 1456 ACGCCGTTTGGTGTTAAAGATGATCTTTCTGATGCTGCTCTGGCTCGTCAGGTTCTGGAG 1515 Query 6260 GATAACGGTGCACCGACTACCGACATGCGCATGGTGCTGGGCGGCGAAGCGATGGCCTCA 6319 |||||||| |||||||| ||||| ||| |||||||| ||| | || || | || | Sbjct 1516 GATAACGGCGCACCGACAACCGATCTGCAGATGGTGCTTGGCTCCACTGCCATTG-CTAA 1574 Query 6320 ATT-CGCGGAAAACAGTCGGTTCTGTTCAAAGCGAACGAAGCAGGTACCGATCAGCTTCT 6378 || |||||||||||||| || |||| |||| ||| ||| | || || || ||||| || Sbjct 1575 TTTGCGCGGAAAACAGTCTGTATTGTTTAAAGTGAATGAATCCGGCACTGAACAGCTACT 1634 Query 6379 GCGTGAAGGTATTATTGGCCGCGTGATGGGCTTTAACCTTCACGAATCCGCCAACATCAA 6438 |||||| || | | || || || ||| || || ||||| || || | || Sbjct 1635 GCGTGAGGGCGTGTTGGGGCGTCTGGAGGGATTCAATATTCACAGTTCGGCAGGTGTGAA 1694 Query 6439 GCGCACAGCGAAAAG-TACGGCGGCGGGCTATACGGTCAACGGCGCGAAGCAGGAAGGCG 6497 || | || ||| | | | || | || ||| || || || | ||| | ||||||| Sbjct 1695 ACG-AGCGCCAAAGGTTGCTGCAACTGGTTATCTCGTGAATGGAGAGAAAAAAGAAGGCG 1753 Query 6498 ATATCATCATCGCTATCTCCACAGGTACCGGTGGTATCGCAGCAGGCACTGCGGTTAAGT 6557 || | | || | || || ||| | || |||| | ||||| |||| || Sbjct 1754 ATGTTCTTATTTCCATTGATACTGGTTCGGGGAGTATTTCTGCAGGTCAGATTGTTACGT 1813 Query 6558 TCGATGGCGACTTTAACCAGTATCTGGTTGTGGCCTCTACGGCC-TCAAGC--ATCACTA 6614 ||| ||| || || |||||| |||||||| | || || ||| | || ||| Sbjct 1814 TCGCTGGTGATCCGAATCAGTAT---GTTGTGGCAGCAGCGACCAGCAATCTGATTACTC 1870 Query 6615 TCGCAGCACCGGGACTGCGCCAGGATCTGGCAGACCAGACAGCTATTACCGTTGTGAGCG 6674 | ||||| || |||||||| ||||||||||| || | || || || || ||||| | | Sbjct 1871 TTGCAGCGCCCGGACTGCGTCAGGATCTGGCCGATGATACTGCCATCACAGTTGTTGGGG 1930 Query 6675 AATTCACACCAAACATGGCATTCGACCGCAATGCTTTCCTGCTGGCGTGCCGCACCCCGG 6734 || || |||| ||||| || || ||||| || || |||||||| | ||| || |||| Sbjct 1931 CCTTTACTGCAAATATGGCGTTTGATCGCAACGCGTTTCTGCTGGCATCCCGTACTCCGG 1990 Query 6735 CAATGCCAAAAGGCGGAGACACCGCCGACGATGTGATGAATGTTACCGACCCGGTGTCAG 6794 ||||||| |||| || || | || || ||||| ||||||||||| |||||| | |||| Sbjct 1991 CAATGCCGGAAGGTGGCGATAATGCTGATGATGTAATGAATGTTACGGACCCGATTTCAG 2050 Query 6795 GCATCACCTTCCAGATCGCGCTCTATCGCCAGTACCGTCAGGTGCGTTACGAGGTTGGCG 6854 | || || |||||||| || || ||||| ||||| || |||||||| || || ||||| Sbjct 2051 GGATTACGTTCCAGATTGCACTGTATCGTCAGTATCGCCAGGTGCGCTATGAAGTTGGAC 2110 Query 6855 TGGCATGGGGTGTGGCATCTGTTCAGCCTGAACACTCCACCATCATCATGGGTTAACC-- 6912 ||||||||||||| |||| || |||| | ||| | || | |||||| | Sbjct 2111 TGGCATGGGGTGTTTCATCAGTGAAGCCGGCACATGGTTGTCTGATTCTTGGTTAAACAT 2170 Query 6913 -CAgggggggCTTCGGCCCCTTTGTTATTCAGGAGGCCCAATGGCCGGATTAACCAAAGA 6971 || |||||||||||||| || ||| | || || | |||||||||||||| ||||| Sbjct 2171 TCAAACGGGGCTTCGGCCCCATTTTTAAT--GGGGGGCATATGGCCGGATTAACTAAAGA 2228 Query 6972 GCAGCGCGCGCAGCGTGA---CGCGGAAAAGCTTGCAGCTCAGCAGGGTATTGAGCTGGT 7028 ||| | || |||||||| ||| |||| | | || |||||| | || Sbjct 2229 GCAAAGAGCACAGCGTGAAGCCGCACAAAA------AACGCA------AATTGAGTTAGT 2276 Query 7029 GGTCATGGTGCGTGACACCCCAGA-GTTCCCCGGCGGCCCGCTGAGCGCTGAGGTTCACC 7087 ||| |||||| || |||| ||| ||||||| || | |||| | ||||| | Sbjct 2277 GGTTATGGTGACCGA-TTATCAGATGTTTCCCGGCGCACCAACTATCGCTAATGTTCATC 2335 Query 7088 ATGACGAAGTGGATAACTGGCAGGCGCTGGACTGG 7122 ||| ||||| || |||||| |||| ||| |||| Sbjct 2336 CTGATGAAGTTGACAACTGGAAGGCTATGGGCTGG 2370 Score = 223 bits (246), Expect = 1e-53 Identities = 479/710 (67%), Gaps = 12/710 (2%) Strand=Plus/Plus Query 5053 TGCCTGTGTACATCCATGATGACGGCAAAGAGATCCCGTTCGACGCAGCCGCAG-CGATG 5111 |||| || || | || || || || ||||| || ||||| ||| |||| | ||| Sbjct 225 TGCCAGTTTATGTGCACGACGATGGTAAAGAAATTGGCTTCGATGCA-CCGCTGGCGACA 283 Query 5112 ACCAAAATCACCTCCCTGAACGGTGAAGCTAAAACTCACCGTGAAGCGAAGGAGGCGGCG 5171 | ||||| || || || || || || |||| ||| || || || || || || Sbjct 284 AAAAAAATTACAGAGCTTAATGGCGAGGCAAAAAATCATCGCCTGGCTAAAGAAGCTGCA 343 Query 5172 GAAGCCAGTCTCGCGAAATTCTCTGGCATCACCGACCCGGCCAAGGCGCTCGAAGCCCTG 5231 || | | || || || || | | ||| |||||| |||||| |||| || ||| Sbjct 344 GAGGAAAAACTGGCTAAGTTTGCCGCGATCGAAGACCCGAAGAAGGCGATCGAGGCACTG 403 Query 5232 GAGATGATGACCAAAATCGACCAGAAAAAACTGATCGATGCTGGTGCCGTTGACCAGGTA 5291 || ||| || | ||||||||||||||||| ||| ||||||| || ||||||||||| Sbjct 404 GAAATGCTGTCAAAAATCGACCAGAAAAAGCTGCTCGATGCGGGACAGGTTGACCAGGTT 463 Query 5292 AAGGCGGAGATCACCAAAGTTTTCCAACAGCAACTCGAAGAGGCGAACAGCAAGACCC-- 5349 ||||| || || || ||| ||| || |||||| | || || | || ||||| | | Sbjct 464 AAGGCAGAAATTACGAAAAATTTTCAGCAGCAATTAGATGAAG--AAAAGCAACGCTCTC 521 Query 5350 AGCAACTGGAAACTCAACTCTACGACGAGATGATCGGCGGCCGCTTCGGTGGCTCCAAAT 5409 || ||||| | || || ||||| ||||| ||||| | || | || || |||| Sbjct 522 AGATGCTGGAGAAGCAGCTTTACGATTCTATGATTGGCGGTAGTTTTGCGGGTTCAAAAT 581 Query 5410 TCATTTCAGAGAAGATGGCGATCCCGGCTGAGTTCGTGCGTTCGTACTTCGGGCAGAACT 5469 ||| | || || || ||||||||||| || || | | | |||||||||| | Sbjct 582 ATATTGCCGATAAAATTGCGATCCCGGCAGATTTATTACAAGCCCGCTTCGGGCAGGCAT 641 Query 5470 TCAAAATCGAAGACGGCAAGGTCGTGGCCTTCGACGGTCAGGGCAATAAGGTGTTCTCTC 5529 ||||| | ||||| || | | |||| || | |||| | ||||| || | | || | Sbjct 642 TCAAAGTGGAAGAAGGGAGGATCGTTGCTTATGACGCTTCCGGCAACAAAATTTATTCCC 701 Query 5530 GCACCAAGCCTGGCGAGCTGGCTAGCTTCGACGAAGCGCTGGAGTCACTGGTCGAGTCGC 5589 || | ||||||||||| ||||| || || || |||||||||| || ||||| Sbjct 702 GCGCGAAGCCTGGCGAACTGGCGCAGTTTGATGAGGCGCTGGAGTTCCTTGTCGAAAATT 761 Query 5590 ATCCGCAGAAAGATTACATCCTCAAAGCGTCCGGTAACAGCGGCGGCGGTTCTCACCAGT 5649 | || |||||||| |||||||| ||||| || |||| |||||||| || | | | Sbjct 762 ACCCTCAGAAAGACTACATCCTGAAAGCCAGTGGCAACAATGGCGGCGGCTCCCGTCCGA 821 Query 5650 CGCAGCACCAGGCCGGGCAAAAAACCATGAAACGCGATGCGTTTGATGCATTACCTCCAG 5709 | ||||| | || || ||||| ||||||||| ||| ||||||||| | | | Sbjct 822 CACAGCATGATATTGGTCAGAAAACGATGAAACGCTCTGCTTTTGATGCACTGGATGTTG 881 Query 5710 CAG---AGCAACAGGCTGTGATTGGCGGCGGCACAAGCATCGTTGATTAA 5756 ||| ||||| | || ||| | ||| |||| |||||||||||| Sbjct 882 CAGGTAAGCAAAACGCATTGAAAGACGGTATCACA---ATCGTTGATTAA 928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158513776562736