Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_016160.1 Length=36661 Score E Sequences producing significant alignments: (Bits) Value seq1103 89.7 1e-13 >seq1103 Length=13301 Score = 89.7 bits (98), Expect = 1e-13 Identities = 95/124 (77%), Gaps = 5/124 (4%) Strand=Plus/Minus Query 11388 TTTTTGCTTTTGCCAAAGGAGCGGGTGTGTTTGCAGAGGCTGGACCTGAAGCCATTATGC 11447 ||||||||||||| ||||| ||||||||| | | || || ||||||||||||||| ||| Sbjct 11724 TTTTTGCTTTTGCAAAAGGCGCGGGTGTGATGGGGGAAGCGGGACCTGAAGCCATTCTGC 11665 Query 11448 CGCTTACCCGTGCTGCTGATGGTTCGCTTGGCGTTCGGGCTGTTGGCACTGGTGGTGGTC 11507 | || || | |||||||||| ||| || ||| ||| | | ||||||||| || Sbjct 11664 CACTGCGTCGCGGTGCTGATGGTAAGCTGGGGGTTGTGGCGGAT---ACTGGTGGT--TC 11610 Query 11508 AGGC 11511 |||| Sbjct 11609 AGGC 11606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117187816202856