Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq18 129 7e-25 >seq18 Length=263653 Score = 129 bits (142), Expect = 7e-25 Identities = 215/311 (69%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 37218 TCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCA 37277 ||||| ||| || | |||||||| | ||| | ||| || | ||| || || | ||| Sbjct 150318 TCATTGCTAAAAGTGAGCCCTGGCATGAGACCACGTTTCTTTAGCCAGAAAATCGAAGCA 150259 Query 37278 AAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAA 37337 || |||||||||||| ||||| || || || |||||||||||||| || | ||| Sbjct 150258 AAGCTTCCAGAAAAGAATATACCCTCGACGGCGGCAAATGCTACAAGTCGATCTCTGAAT 150199 Query 37338 GTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCA 37397 | ||| | | || | |||||| | | |||||| ||||| ||||| ||| | Sbjct 150198 GGTGACTTTTTGTCCGCTATCCATCGTAGAGCCCAATCGGCCTTCTTCTTAACGCATGGA 150139 Query 37398 ATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCA 37457 || || ||||| || || || || || ||| | |||| ||||| || ||| Sbjct 150138 ATGGTCTCAATGGCGTTGAACAGGTGGTGGCGTTCCGCTTCATCTTGAATATACGTGTCA 150079 Query 37458 ATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAA 37517 || || | ||||||||| || ||||||||||| || ||||| || || || || ||||| Sbjct 150078 ATCAGCAGACTATACATCTCCGAGTGAATATTCTCTATAGCAATTTGGAAGCCGTAAAAG 150019 Query 37518 CACCTAGCTTC 37528 || | ||| || Sbjct 150018 CAGCGAGCCTC 150008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592286029142240