Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq18 129 7e-25
>seq18
Length=263653
Score = 129 bits (142), Expect = 7e-25
Identities = 215/311 (69%), Gaps = 0/311 (0%)
Strand=Plus/Minus
Query 37218 TCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCA 37277
||||| ||| || | |||||||| | ||| | ||| || | ||| || || | |||
Sbjct 150318 TCATTGCTAAAAGTGAGCCCTGGCATGAGACCACGTTTCTTTAGCCAGAAAATCGAAGCA 150259
Query 37278 AAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAA 37337
|| |||||||||||| ||||| || || || |||||||||||||| || | |||
Sbjct 150258 AAGCTTCCAGAAAAGAATATACCCTCGACGGCGGCAAATGCTACAAGTCGATCTCTGAAT 150199
Query 37338 GTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCA 37397
| ||| | | || | |||||| | | |||||| ||||| ||||| ||| |
Sbjct 150198 GGTGACTTTTTGTCCGCTATCCATCGTAGAGCCCAATCGGCCTTCTTCTTAACGCATGGA 150139
Query 37398 ATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCA 37457
|| || ||||| || || || || || ||| | |||| ||||| || |||
Sbjct 150138 ATGGTCTCAATGGCGTTGAACAGGTGGTGGCGTTCCGCTTCATCTTGAATATACGTGTCA 150079
Query 37458 ATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAA 37517
|| || | ||||||||| || ||||||||||| || ||||| || || || || |||||
Sbjct 150078 ATCAGCAGACTATACATCTCCGAGTGAATATTCTCTATAGCAATTTGGAAGCCGTAAAAG 150019
Query 37518 CACCTAGCTTC 37528
|| | ||| ||
Sbjct 150018 CAGCGAGCCTC 150008
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592286029142240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |