Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_018279.1 Length=49116 Score E Sequences producing significant alignments: (Bits) Value seq1687 134 4e-27 >seq1687 Length=6128 Score = 134 bits (148), Expect = 4e-27 Identities = 140/180 (78%), Gaps = 3/180 (2%) Strand=Plus/Plus Query 26060 AAACAGAAAGGTGCAATCTCCCtttttttAGTGTTACCATCATTTGACCAAATGACAGAT 26119 |||| ||||||| ||||||||||||||||||||||| |||| | ||| || || | Sbjct 658 AAACGGAAAGGTACAATCTCCCTTTTTTTAGTGTTAACATCGCTCAACCGGGTGGAAGGT 717 Query 26120 CC-AGCGTAGCGGATTATCATTTGTGTACCAGATTGTGTACCAATTTAGCAATTGTTGGT 26178 || || | || ||||||||||||| ||||| | |||||||||||| ||||||| Sbjct 718 GAGAGGTTAATGTCTT-TCATTTGTGTACCTGATTGCGAACCAATTTAGCATTTGTTGGC 776 Query 26179 TAGATGGATACACAACTCACTGTAAATAAATTCATTTTCTCTTTGTATGTGATCTTGCGT 26238 ||||||| | | ||| ||||| |||||| ||||| ||||||||||||||||| ||| Sbjct 777 TAGATGGTTTCGCAATGAACTGTTAATAAACAAATTTT-TCTTTGTATGTGATCTTTCGT 835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157041849209616