Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq223 127 2e-24 >seq223 Length=82600 Score = 127 bits (140), Expect = 2e-24 Identities = 118/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 |||| ||| ||| ||||| || | ||||||||||| |||||||| |||||||| ||||| Sbjct 42624 CAATAGCTCACCAGCAAAGATTAGTCGCTGTTGATCAGGCGGAATACCTTCTTTGTCTTG 42683 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||||| |||||| |||| | ||| || || | ||||||||| || || | || || Sbjct 42684 TATTTTAGTCTTTACATTTTCAATAGTATCCGAAGGTTCCACTTCCAGCGTAATTGTCTT 42743 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| |||| |||||| || ||||||||||| Sbjct 42744 GCCAGTTAGAGTTTTCACGAATATCTGCAT 42773 Score = 125 bits (138), Expect = 6e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| || ||||| |||||||| || ||||| ||||| ||||| |||||||| Sbjct 42066 TACCAGCAAAAATTAAACGTTGTTGATCAGGTGGAATACCTTCCTTATCCTGAATTTTGG 42125 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||| || |||| | |||||| |||| |||||||| || || | ||||| ||||||| Sbjct 42126 CTTTCACGTTTTCAATAGTGTCCGACGGCTCCACTTCCAGCGTTATTGTTTTTCCGGTTA 42185 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 ||||||| ||||| || ||||| Sbjct 42186 AAGTTTTCACAAAAATTTGCAT 42207 Score = 116 bits (128), Expect = 3e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || |||||| || || | |||||||||||| || ||||||||||| |||||||||||||| Sbjct 43773 CTAACCTGCGAAGATTAGACGCTGTTGATCCGGAGGAATGCCTTCCTTATCTTGAATTTT 43832 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | || ||| |||| | | |||||||| || |||||||| || | ||||| || || Sbjct 43833 ATTCTTCACATTTTCAATTGAGTCAGACGGCTCAACTTCAAGCGTAATGGTTTTTCCCGT 43892 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | ||||| || || |||||||| Sbjct 43893 GAGCGTTTTCACGAAAATCTGCAT 43916 Score = 114 bits (126), Expect = 1e-20 Identities = 116/150 (77%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 101322 ATTGCTT-ACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 |||| || ||| ||||| || || ||||| ||||| || |||||||||||||| ||||| Sbjct 42343 ATTGATTCACCAGCAAAAATTAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGT 42402 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 |||||| ||| || |||| | ||||| |||| |||||||| || |||| ||||| Sbjct 42403 ATTTTTGTTTTAACGTTTTCAATGGTGTCTGACGGCTCCACTTCGAGGGTGATTGTTTTT 42462 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || | ||||| || ||||| |||||| Sbjct 42463 CCAGTAAGCGTTTTAACGAATATTTGCATG 42492 Score = 113 bits (124), Expect = 4e-20 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || ||| || || ||||| || || ||||| || || |||||||| || || |||||||| Sbjct 43492 CTCACCGGCGAAGATCAACCGTTGCTGATCCGGGGGGATGCCTTCCTTGTCCTGAATTTT 43551 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | ||||| | || || ||||| || | ||||||||| | || | ||||||||||| Sbjct 43552 TGCCTTTACGTTCTCAACCGTGTCCGAAGGTTCCACTTCTAATGTTATTGTTTTGCCGGT 43611 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 |||||| || ||||| ||||||||| Sbjct 43612 TAAAGTCTTGACAAAAATCTGCATG 43636 Score = 104 bits (114), Expect = 2e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| ||||| || | ||||| ||||| || || || ||||| |||||||||||||| Sbjct 43196 CTTACCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATTCCTTCCTTATCTTGAATTTT 43255 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || || | || | || || |||| || ||||| || || | ||||||||||| Sbjct 43256 CGTCTTCACGTTATCAATGGTATCGGACGGCTCAACTTCCAGCGTAATAGTTTTGCCGGT 43315 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 || ||||| ||||||||||||||| Sbjct 43316 TAGCGTTTTCACAAATATCTGCATG 43340 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| || || |||| |||||||| ||||| || || || || |||||||||||||| Sbjct 41783 TTACCGGCGAAAATCAGGCGCTGTTGGTCGGGTGGTATCCCCTCCTTATCTTGAATTTTC 41842 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||||| | || | || || |||| || ||||| || |||| |||||||| ||| Sbjct 41843 GTCTTTACGTTCTCGATCGTATCCGACGGCTCGACTTCCAGGGTGATTGTTTTGCCAGTT 41902 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | |||||| ||||| || ||||| Sbjct 41903 AGAGTTTTCACAAAGATTTGCAT 41925 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 |||||||| || || | |||||| || || || ||||| |||||||| |||||||| || Sbjct 42916 TTACCTGCGAAGATAAGACGCTGCTGGTCAGGTGGAATACCTTCTTTGTCTTGAATCTTA 42975 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||| |||| || ||||||||||||| || ||||| || Sbjct 42976 GTCTTAACATTCTCAATGGTGTCTGACGGCTCTACTTCAAGAGTGATAGTCTTGCCCGTC 43035 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || || || || || || ||||| Sbjct 43036 AATGTCTTGACGAAAATTTGCAT 43058 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||||||||| || || ||||| ||||| || || || || ||||| ||||| || || Sbjct 41495 TTACCTGCAAAAATTAATCGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGGATCTTC 41554 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| |||||| || || || | |||||||| | ||| | || || || || Sbjct 41555 GCCTTGACATTTTCTATGGTATCCGAAGGCTCCACTTCCAAAGTAATAGTCTTCCCTGTC 41614 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||||| || ||||||||||| Sbjct 41615 AGCGTTTTCACGAATATCTGCAT 41637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396258328003692