Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq223 127 2e-24
>seq223
Length=82600
Score = 127 bits (140), Expect = 2e-24
Identities = 118/150 (79%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379
|||| ||| ||| ||||| || | ||||||||||| |||||||| |||||||| |||||
Sbjct 42624 CAATAGCTCACCAGCAAAGATTAGTCGCTGTTGATCAGGCGGAATACCTTCTTTGTCTTG 42683
Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439
||||| |||||| |||| | ||| || || | ||||||||| || || | || ||
Sbjct 42684 TATTTTAGTCTTTACATTTTCAATAGTATCCGAAGGTTCCACTTCCAGCGTAATTGTCTT 42743
Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||| |||| |||||| || |||||||||||
Sbjct 42744 GCCAGTTAGAGTTTTCACGAATATCTGCAT 42773
Score = 125 bits (138), Expect = 6e-24
Identities = 113/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||| || ||||| |||||||| || ||||| ||||| ||||| ||||||||
Sbjct 42066 TACCAGCAAAAATTAAACGTTGTTGATCAGGTGGAATACCTTCCTTATCCTGAATTTTGG 42125
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||| || |||| | |||||| |||| |||||||| || || | ||||| |||||||
Sbjct 42126 CTTTCACGTTTTCAATAGTGTCCGACGGCTCCACTTCCAGCGTTATTGTTTTTCCGGTTA 42185
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
||||||| ||||| || |||||
Sbjct 42186 AAGTTTTCACAAAAATTTGCAT 42207
Score = 116 bits (128), Expect = 3e-21
Identities = 112/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
|| |||||| || || | |||||||||||| || ||||||||||| ||||||||||||||
Sbjct 43773 CTAACCTGCGAAGATTAGACGCTGTTGATCCGGAGGAATGCCTTCCTTATCTTGAATTTT 43832
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
| || ||| |||| | | |||||||| || |||||||| || | ||||| || ||
Sbjct 43833 ATTCTTCACATTTTCAATTGAGTCAGACGGCTCAACTTCAAGCGTAATGGTTTTTCCCGT 43892
Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469
| ||||| || || ||||||||
Sbjct 43893 GAGCGTTTTCACGAAAATCTGCAT 43916
Score = 114 bits (126), Expect = 1e-20
Identities = 116/150 (77%), Gaps = 1/150 (1%)
Strand=Plus/Plus
Query 101322 ATTGCTT-ACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
|||| || ||| ||||| || || ||||| ||||| || |||||||||||||| |||||
Sbjct 42343 ATTGATTCACCAGCAAAAATTAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGT 42402
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|||||| ||| || |||| | ||||| |||| |||||||| || |||| |||||
Sbjct 42403 ATTTTTGTTTTAACGTTTTCAATGGTGTCTGACGGCTCCACTTCGAGGGTGATTGTTTTT 42462
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| || | ||||| || ||||| ||||||
Sbjct 42463 CCAGTAAGCGTTTTAACGAATATTTGCATG 42492
Score = 113 bits (124), Expect = 4e-20
Identities = 112/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
|| ||| || || ||||| || || ||||| || || |||||||| || || ||||||||
Sbjct 43492 CTCACCGGCGAAGATCAACCGTTGCTGATCCGGGGGGATGCCTTCCTTGTCCTGAATTTT 43551
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
| ||||| | || || ||||| || | ||||||||| | || | |||||||||||
Sbjct 43552 TGCCTTTACGTTCTCAACCGTGTCCGAAGGTTCCACTTCTAATGTTATTGTTTTGCCGGT 43611
Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470
|||||| || ||||| |||||||||
Sbjct 43612 TAAAGTCTTGACAAAAATCTGCATG 43636
Score = 104 bits (114), Expect = 2e-17
Identities = 110/145 (76%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
|||||| ||||| || | ||||| ||||| || || || ||||| ||||||||||||||
Sbjct 43196 CTTACCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATTCCTTCCTTATCTTGAATTTT 43255
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
|| || | || | || || |||| || ||||| || || | |||||||||||
Sbjct 43256 CGTCTTCACGTTATCAATGGTATCGGACGGCTCAACTTCCAGCGTAATAGTTTTGCCGGT 43315
Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470
|| ||||| |||||||||||||||
Sbjct 43316 TAGCGTTTTCACAAATATCTGCATG 43340
Score = 100 bits (110), Expect = 2e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
||||| || || |||| |||||||| ||||| || || || || ||||||||||||||
Sbjct 41783 TTACCGGCGAAAATCAGGCGCTGTTGGTCGGGTGGTATCCCCTCCTTATCTTGAATTTTC 41842
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
||||| | || | || || |||| || ||||| || |||| |||||||| |||
Sbjct 41843 GTCTTTACGTTCTCGATCGTATCCGACGGCTCGACTTCCAGGGTGATTGTTTTGCCAGTT 41902
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| |||||| ||||| || |||||
Sbjct 41903 AGAGTTTTCACAAAGATTTGCAT 41925
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|||||||| || || | |||||| || || || ||||| |||||||| |||||||| ||
Sbjct 42916 TTACCTGCGAAGATAAGACGCTGCTGGTCAGGTGGAATACCTTCTTTGTCTTGAATCTTA 42975
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| ||| | || | ||||| |||| || ||||||||||||| || ||||| ||
Sbjct 42976 GTCTTAACATTCTCAATGGTGTCTGACGGCTCTACTTCAAGAGTGATAGTCTTGCCCGTC 43035
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
|| || || || || || |||||
Sbjct 43036 AATGTCTTGACGAAAATTTGCAT 43058
Score = 87.8 bits (96), Expect = 1e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
||||||||||| || || ||||| ||||| || || || || ||||| ||||| || ||
Sbjct 41495 TTACCTGCAAAAATTAATCGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGGATCTTC 41554
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| ||| |||||| || || || | |||||||| | ||| | || || || ||
Sbjct 41555 GCCTTGACATTTTCTATGGTATCCGAAGGCTCCACTTCCAAAGTAATAGTCTTCCCTGTC 41614
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| ||||| || |||||||||||
Sbjct 41615 AGCGTTTTCACGAATATCTGCAT 41637
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396258328003692
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |