Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_018846.1
Length=60894
Score E
Sequences producing significant alignments: (Bits) Value
seq974 324 5e-84
seq1066 302 2e-77
>seq974
Length=15858
Score = 324 bits (358), Expect = 5e-84
Identities = 561/810 (69%), Gaps = 4/810 (0%)
Strand=Plus/Minus
Query 138 TCAGGCATCCATGCACCATAAACATTGTAGACCATGCTGGCGCTGGAGTGCCCCATCTGT 197
|||| ||||||||| || || |||||| | ||||| ||| || | |||||||||||
Sbjct 809 TCAGTCATCCATGCTCCGTATACATTGAACACCATCTGGGCACTTGCATGCCCCATCTGG 750
Query 198 GATGCAATAAATGTCGGGTTTGCTCCGGCAGATAAAGCCCAGCACGCATAGGTATGGCGT 257
||||| || | |||||||||||||||||||| | |||||||||||| || || |||
Sbjct 749 CTGGCAATGAAGCTTGGGTTTGCTCCGGCAGATAATGACCAGCACGCATAAGTGTGTCGT 690
Query 258 GACTGATACGCTTTACGGGATCGGATACCCGCTCTTTTTATTGCTGAATCCCATGTCGCT 317
||||| || ||||| ||| | ||| ||||| | || || |||| ||||||| |
Sbjct 689 GACTGGTATGCTTTCCGGTGCCTGATGCCCGCACGCTTAATGGCTGTTTCCCATGAGTCG 630
Query 318 CCGATGGAGCTTACCGCGTAGTTAATACCAGCCT-TGTGATTCTTGCGAACGATTTGCGG 376
|| ||||| |||| |||| ||| ||| ||| | || || || | ||| | || ||
Sbjct 629 CCAATGGAATCTACCTTGTAGATAAAACCTACCTGTTTGCTT-TTTCTAACCACCTGGGG 571
Query 377 ACAGAAAACAAAAGTGCACTCGTGCAAAATTGTTCTTCCGTACTCGCGTAATTGAACAGT 436
|| || ||||| || || || | || | ||| || || |||| |||||| |
Sbjct 570 GTTAAATACGAAAGTACATTCATGATTCACTGAACGTCCATATTCACGTAGTTGAACCTT 511
Query 437 GATCTGATGCTGCCTGCTAAGACGAGTAAGCATCGCCTGGTTTTTAAGTGCTTCAATTGC 496
||| || |||||| | | || | || | ||||| ||||| || | || ||
Sbjct 510 GATGTGGTGCTGCTTACCCAGTCTTGTCATTTCAGCCTGATTTTTCAGGACACTGATAGC 451
Query 497 TGGTGCCAGAAGATGTATAACCCGGTTAGTGCCTGCGTCGGTCTTTGGTAGCGTAAAATC 556
|| | |||||| | ||||| ||| || | ||| || || || ||||| || || ||
Sbjct 450 GGGCTGGATAAGATGCACAACCCTGTTTGTACTTGCTTCAGTTTTAGGTAGAGTGAACTC 391
Query 557 ACCTATTTTTGTAAAATTTCGTCGCACTGTTATCGTGCCAGCTTTCAGGTCGATATCCTC 616
||| | ||| ||| |||| || | | || || || || |||||||| |||||||| ||
Sbjct 390 ACCGAGTTTCGTATAATTGCGCCTGATAGTAATAGTTCCTGCTTTCAGATCGATATCTTC 331
Query 617 CCATGCAAGTGCGGCAATTTCACCGTGTCGCATCCCTGTAAAAACAGCCACTGTCCAGAG 676
||| || || | | | | ||||||||| ||||| ||||| | ||||||| || ||| ||
Sbjct 330 CCAGGCCAGGGAGACCAGTTCACCGTGACGCATTCCTGTGTACACAGCCAATGACCACAG 271
Query 677 GTTTTTGGTCTGTTGATGATGGCAGGCATCAATGAGACGGCTAAACTCATCTCTGGTCAG 736
|||||| ||||| ||||| |||| ||||| || || || |||| || || | || ||
Sbjct 270 GTTTTTCGTCTGCTGATGTCGGCAAGCATCTATCAGGCGAATAAATTCGTCACGAGTTAG 211
Query 737 TGGATCCGGCACTGGTTTTGATTTCCTCAGCGGTGTTATTGAATTAAACGGGTTTTTCTC 796
||||| ||| ||| | | | | | || || | ||| | || || ||| ||
Sbjct 210 CGGATCTGGCTCTGCCCTGGCTCTTTTAAGAGGCTTAATTCCCTGGAAGGGATTTGCTTC 151
Query 797 CAGATACCCGTTTTCGGCGGCAAAGCTG-AACATTCCGGCTGTTGTTGTCATGTAATAGT 855
| || |||| || || ||||| ||| |||||||| || |||| ||||||||||| |
Sbjct 150 TAAGTAACCGTGATCTGCAGCAAA-CTGAAACATTCCAGCGATTGTCGTCATGTAATAAT 92
Query 856 TCACTGTGGGTACGGTTCTTCCTTTTCGGGACGTGCTGGTTTTCCTGCTTCCCTTTTCCC 915
| || || ||| | | ||||||| | | || ||||| | || | ||
Sbjct 91 TTACAGTAACGACGCTCCGTCCTTTTGCTGCTGCTTTGTTTTTCGTTGAATTCTGATACC 32
Query 916 CGGTCAGTAAATCTTTCCTGATAAACAGCA 945
||||||| ||||||||||||||| ||||||
Sbjct 31 CGGTCAGCAAATCTTTCCTGATATACAGCA 2
>seq1066
Length=13853
Score = 302 bits (334), Expect = 2e-77
Identities = 254/313 (81%), Gaps = 8/313 (3%)
Strand=Plus/Minus
Query 23441 GTCAAAGCAGCAATGTCGCTGGGGCGTCGTGCAATTGGCGTTGAGCTGGAGACTGAACGT 23500
||||||||||| ||| |||||||||||||||||||||| || ||||||||| ||||||||
Sbjct 410 GTCAAAGCAGCGATGGCGCTGGGGCGTCGTGCAATTGGTGTCGAGCTGGAGGCTGAACGT 351
Query 23501 TTTGAGCAGACGGTCAGGGAAGTTCAGGATTTAGTCAGTCAGAACGGATGATATTGCAGG 23560
||||||||||| | || || || ||| ||| | |||| ||| | ||||||||| |
Sbjct 350 TTTGAGCAGACCGCAAGAGATGTACAGAATTCAATCAGAAAGAGAGAGTGATATTGCTGA 291
Query 23561 ATTAGTTACGTACCGTTATTATCCTGCGCCCGGCCCTTTAGCTCAGTGGTGAGAGCGAGC 23620
||| || ||| |||||| || || ||||||||||||||||||||||||||||||
Sbjct 290 ATTTATTCTGTAACGTTATCATTATGTTATCGGCCCTTTAGCTCAGTGGTGAGAGCGAGC 231
Query 23621 GACTCATAATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCATATCACATACCGC 23680
||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
Sbjct 230 GACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCA--------ACCAC 179
Query 23681 CATTAGCTCATCGGGACAGAGCGCCAGCCTTCGAAGCTGGCTGCGCGGGGTTCGAGTCCT 23740
|| ||||||||| ||| ||||| || ||||| ||| || | | ||| ||||||||||||
Sbjct 178 CACTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTGCGAGGTTCGAGTCCT 119
Query 23741 CGATGGCGGTCCA 23753
|| ||| || |||
Sbjct 118 CGGTGGTGGGCCA 106
Score = 159 bits (176), Expect = 1e-34
Identities = 196/262 (75%), Gaps = 7/262 (3%)
Strand=Plus/Plus
Query 13832 ACTGGGATAGTAGCCATAATGGCAGCCTCCTTGATTGGTGATTGATAACCACCGCTGGAG 13891
|||||||| |||||||||||||||||||||||||| ||||| | ||||| | ||||
Sbjct 8031 ACTGGGATCGTAGCCATAATGGCAGCCTCCTTGATCGGTGAAATACTTCCACCACCGGAG 8090
Query 13892 GTAGCAAGCTCGCTGGCGGTGGACTGTACAGGGTTGCTACAACTGGCAATCAAGGGAACC 13951
|| || |||||||| || |||||| |||||||| || || ||| ||||||| ||||
Sbjct 8091 GTGCAAATCTCGCTGGTGGCGGACTGAACAGGGTTTGCACTACCGGCGATCAAGGAAACC 8150
Query 13952 AGCCCGACCGAAGTCGGC-CCCAT--ACAGCCCACCATTGATAAGATGTGCGTGTATGTC 14008
| ||| | ||||| ||| | ||||||||||| | | ||||||| ||
Sbjct 8151 GG--CGAGC-CTTTCGGCTCCCCTGCCCAGCCCACCATAATTCTGGCGTGCGTGAGCGTG 8207
Query 14009 GATACaaaaaaaGACGCTGGCGCGTC-TGTATCGCCTCGATTGTCAGCGGGGTAGCAATC 14067
|| |||||||||||||||||||| | |||||||| ||| |||||| ||||
Sbjct 8208 GACGATAAAAAAGACGCTGGCGCGTCGTATATCGCCTTGATCAATTCCGGGGTGCAAATC 8267
Query 14068 CCGACACCCGTTTTATGAGGTG 14089
||| |||||||||||| |||||
Sbjct 8268 CCGGCACCCGTTTTATAAGGTG 8289
Score = 116 bits (128), Expect = 1e-21
Identities = 124/163 (76%), Gaps = 3/163 (2%)
Strand=Plus/Minus
Query 22714 CTGATGCGTGATATCCGGCAGGTTCTTGAGCGCTGGGGGGCATGGGCGGCAAATAACCAT 22773
|||||||||||||| | ||||||||| || ||||||||||||| ||||||||| ||
Sbjct 3056 CTGATGCGTGATATTCAAATGGTTCTTGAACGTTGGGGGGCATGGGTGGCAAATAATCAC 2997
Query 22774 GAGGATGTTACATGGTCGCCCATTGCTGCCGGATTTAAGAGGCTGATCCCCGAAAAAGTA 22833
|||||||| |||||| | ||||||| || |||||| | | ||||| ||||||
Sbjct 2996 GAGGATGTGGAATGGTCATCTGTTGCTGCAGGTTTTAAGGGATTAATCCCTTCGAAAGTA 2937
Query 22834 AAATCACGTCCACAGTGTTG---TGACGATGACGCGATGATTA 22873
||||| || || || ||| | |||||||| | ||| ||||
Sbjct 2936 AAATCCCGCCCGCAATGTAGCGATGACGATGGCCTGATCATTA 2894
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 194729589133632
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