Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_018846.1 Length=60894 Score E Sequences producing significant alignments: (Bits) Value seq974 324 5e-84 seq1066 302 2e-77 >seq974 Length=15858 Score = 324 bits (358), Expect = 5e-84 Identities = 561/810 (69%), Gaps = 4/810 (0%) Strand=Plus/Minus Query 138 TCAGGCATCCATGCACCATAAACATTGTAGACCATGCTGGCGCTGGAGTGCCCCATCTGT 197 |||| ||||||||| || || |||||| | ||||| ||| || | ||||||||||| Sbjct 809 TCAGTCATCCATGCTCCGTATACATTGAACACCATCTGGGCACTTGCATGCCCCATCTGG 750 Query 198 GATGCAATAAATGTCGGGTTTGCTCCGGCAGATAAAGCCCAGCACGCATAGGTATGGCGT 257 ||||| || | |||||||||||||||||||| | |||||||||||| || || ||| Sbjct 749 CTGGCAATGAAGCTTGGGTTTGCTCCGGCAGATAATGACCAGCACGCATAAGTGTGTCGT 690 Query 258 GACTGATACGCTTTACGGGATCGGATACCCGCTCTTTTTATTGCTGAATCCCATGTCGCT 317 ||||| || ||||| ||| | ||| ||||| | || || |||| ||||||| | Sbjct 689 GACTGGTATGCTTTCCGGTGCCTGATGCCCGCACGCTTAATGGCTGTTTCCCATGAGTCG 630 Query 318 CCGATGGAGCTTACCGCGTAGTTAATACCAGCCT-TGTGATTCTTGCGAACGATTTGCGG 376 || ||||| |||| |||| ||| ||| ||| | || || || | ||| | || || Sbjct 629 CCAATGGAATCTACCTTGTAGATAAAACCTACCTGTTTGCTT-TTTCTAACCACCTGGGG 571 Query 377 ACAGAAAACAAAAGTGCACTCGTGCAAAATTGTTCTTCCGTACTCGCGTAATTGAACAGT 436 || || ||||| || || || | || | ||| || || |||| |||||| | Sbjct 570 GTTAAATACGAAAGTACATTCATGATTCACTGAACGTCCATATTCACGTAGTTGAACCTT 511 Query 437 GATCTGATGCTGCCTGCTAAGACGAGTAAGCATCGCCTGGTTTTTAAGTGCTTCAATTGC 496 ||| || |||||| | | || | || | ||||| ||||| || | || || Sbjct 510 GATGTGGTGCTGCTTACCCAGTCTTGTCATTTCAGCCTGATTTTTCAGGACACTGATAGC 451 Query 497 TGGTGCCAGAAGATGTATAACCCGGTTAGTGCCTGCGTCGGTCTTTGGTAGCGTAAAATC 556 || | |||||| | ||||| ||| || | ||| || || || ||||| || || || Sbjct 450 GGGCTGGATAAGATGCACAACCCTGTTTGTACTTGCTTCAGTTTTAGGTAGAGTGAACTC 391 Query 557 ACCTATTTTTGTAAAATTTCGTCGCACTGTTATCGTGCCAGCTTTCAGGTCGATATCCTC 616 ||| | ||| ||| |||| || | | || || || || |||||||| |||||||| || Sbjct 390 ACCGAGTTTCGTATAATTGCGCCTGATAGTAATAGTTCCTGCTTTCAGATCGATATCTTC 331 Query 617 CCATGCAAGTGCGGCAATTTCACCGTGTCGCATCCCTGTAAAAACAGCCACTGTCCAGAG 676 ||| || || | | | | ||||||||| ||||| ||||| | ||||||| || ||| || Sbjct 330 CCAGGCCAGGGAGACCAGTTCACCGTGACGCATTCCTGTGTACACAGCCAATGACCACAG 271 Query 677 GTTTTTGGTCTGTTGATGATGGCAGGCATCAATGAGACGGCTAAACTCATCTCTGGTCAG 736 |||||| ||||| ||||| |||| ||||| || || || |||| || || | || || Sbjct 270 GTTTTTCGTCTGCTGATGTCGGCAAGCATCTATCAGGCGAATAAATTCGTCACGAGTTAG 211 Query 737 TGGATCCGGCACTGGTTTTGATTTCCTCAGCGGTGTTATTGAATTAAACGGGTTTTTCTC 796 ||||| ||| ||| | | | | | || || | ||| | || || ||| || Sbjct 210 CGGATCTGGCTCTGCCCTGGCTCTTTTAAGAGGCTTAATTCCCTGGAAGGGATTTGCTTC 151 Query 797 CAGATACCCGTTTTCGGCGGCAAAGCTG-AACATTCCGGCTGTTGTTGTCATGTAATAGT 855 | || |||| || || ||||| ||| |||||||| || |||| ||||||||||| | Sbjct 150 TAAGTAACCGTGATCTGCAGCAAA-CTGAAACATTCCAGCGATTGTCGTCATGTAATAAT 92 Query 856 TCACTGTGGGTACGGTTCTTCCTTTTCGGGACGTGCTGGTTTTCCTGCTTCCCTTTTCCC 915 | || || ||| | | ||||||| | | || ||||| | || | || Sbjct 91 TTACAGTAACGACGCTCCGTCCTTTTGCTGCTGCTTTGTTTTTCGTTGAATTCTGATACC 32 Query 916 CGGTCAGTAAATCTTTCCTGATAAACAGCA 945 ||||||| ||||||||||||||| |||||| Sbjct 31 CGGTCAGCAAATCTTTCCTGATATACAGCA 2 >seq1066 Length=13853 Score = 302 bits (334), Expect = 2e-77 Identities = 254/313 (81%), Gaps = 8/313 (3%) Strand=Plus/Minus Query 23441 GTCAAAGCAGCAATGTCGCTGGGGCGTCGTGCAATTGGCGTTGAGCTGGAGACTGAACGT 23500 ||||||||||| ||| |||||||||||||||||||||| || ||||||||| |||||||| Sbjct 410 GTCAAAGCAGCGATGGCGCTGGGGCGTCGTGCAATTGGTGTCGAGCTGGAGGCTGAACGT 351 Query 23501 TTTGAGCAGACGGTCAGGGAAGTTCAGGATTTAGTCAGTCAGAACGGATGATATTGCAGG 23560 ||||||||||| | || || || ||| ||| | |||| ||| | ||||||||| | Sbjct 350 TTTGAGCAGACCGCAAGAGATGTACAGAATTCAATCAGAAAGAGAGAGTGATATTGCTGA 291 Query 23561 ATTAGTTACGTACCGTTATTATCCTGCGCCCGGCCCTTTAGCTCAGTGGTGAGAGCGAGC 23620 ||| || ||| |||||| || || |||||||||||||||||||||||||||||| Sbjct 290 ATTTATTCTGTAACGTTATCATTATGTTATCGGCCCTTTAGCTCAGTGGTGAGAGCGAGC 231 Query 23621 GACTCATAATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCATATCACATACCGC 23680 ||||||||||||||||||||||||||||| ||||||||||||||||| ||| | Sbjct 230 GACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCA--------ACCAC 179 Query 23681 CATTAGCTCATCGGGACAGAGCGCCAGCCTTCGAAGCTGGCTGCGCGGGGTTCGAGTCCT 23740 || ||||||||| ||| ||||| || ||||| ||| || | | ||| |||||||||||| Sbjct 178 CACTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTGCGAGGTTCGAGTCCT 119 Query 23741 CGATGGCGGTCCA 23753 || ||| || ||| Sbjct 118 CGGTGGTGGGCCA 106 Score = 159 bits (176), Expect = 1e-34 Identities = 196/262 (75%), Gaps = 7/262 (3%) Strand=Plus/Plus Query 13832 ACTGGGATAGTAGCCATAATGGCAGCCTCCTTGATTGGTGATTGATAACCACCGCTGGAG 13891 |||||||| |||||||||||||||||||||||||| ||||| | ||||| | |||| Sbjct 8031 ACTGGGATCGTAGCCATAATGGCAGCCTCCTTGATCGGTGAAATACTTCCACCACCGGAG 8090 Query 13892 GTAGCAAGCTCGCTGGCGGTGGACTGTACAGGGTTGCTACAACTGGCAATCAAGGGAACC 13951 || || |||||||| || |||||| |||||||| || || ||| ||||||| |||| Sbjct 8091 GTGCAAATCTCGCTGGTGGCGGACTGAACAGGGTTTGCACTACCGGCGATCAAGGAAACC 8150 Query 13952 AGCCCGACCGAAGTCGGC-CCCAT--ACAGCCCACCATTGATAAGATGTGCGTGTATGTC 14008 | ||| | ||||| ||| | ||||||||||| | | ||||||| || Sbjct 8151 GG--CGAGC-CTTTCGGCTCCCCTGCCCAGCCCACCATAATTCTGGCGTGCGTGAGCGTG 8207 Query 14009 GATACaaaaaaaGACGCTGGCGCGTC-TGTATCGCCTCGATTGTCAGCGGGGTAGCAATC 14067 || |||||||||||||||||||| | |||||||| ||| |||||| |||| Sbjct 8208 GACGATAAAAAAGACGCTGGCGCGTCGTATATCGCCTTGATCAATTCCGGGGTGCAAATC 8267 Query 14068 CCGACACCCGTTTTATGAGGTG 14089 ||| |||||||||||| ||||| Sbjct 8268 CCGGCACCCGTTTTATAAGGTG 8289 Score = 116 bits (128), Expect = 1e-21 Identities = 124/163 (76%), Gaps = 3/163 (2%) Strand=Plus/Minus Query 22714 CTGATGCGTGATATCCGGCAGGTTCTTGAGCGCTGGGGGGCATGGGCGGCAAATAACCAT 22773 |||||||||||||| | ||||||||| || ||||||||||||| ||||||||| || Sbjct 3056 CTGATGCGTGATATTCAAATGGTTCTTGAACGTTGGGGGGCATGGGTGGCAAATAATCAC 2997 Query 22774 GAGGATGTTACATGGTCGCCCATTGCTGCCGGATTTAAGAGGCTGATCCCCGAAAAAGTA 22833 |||||||| |||||| | ||||||| || |||||| | | ||||| |||||| Sbjct 2996 GAGGATGTGGAATGGTCATCTGTTGCTGCAGGTTTTAAGGGATTAATCCCTTCGAAAGTA 2937 Query 22834 AAATCACGTCCACAGTGTTG---TGACGATGACGCGATGATTA 22873 ||||| || || || ||| | |||||||| | ||| |||| Sbjct 2936 AAATCCCGCCCGCAATGTAGCGATGACGATGGCCTGATCATTA 2894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194729589133632