Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_018860.1 Length=156176 Score E Sequences producing significant alignments: (Bits) Value seq1599 86.0 6e-12 seq295 82.4 8e-11 >seq1599 Length=6876 Score = 86.0 bits (94), Expect = 6e-12 Identities = 54/57 (95%), Gaps = 1/57 (2%) Strand=Plus/Minus Query 1358 AGGA-GTGGGATTCGAACCCACGCACGCTTTTACACGCCTAGCGGTTTTCAAGACCG 1413 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 6837 AGGATGTGGGATTCGAACCCACGCACGCTTTTACACGCCTGACGGTTTTCAAGACCG 6781 >seq295 Length=62236 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 734 GAATATGGTGGACGGAGTAGGGATCGAACCTACGACACGAGGATTTTCAGCCCTCTGCTC 793 |||| ||||| |||| | || |||||||| | |||||| ||||||||| || |||||| Sbjct 26014 GAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTC 25955 Query 794 TACCAACTGAGCTATCCG 811 |||| ||||||||||||| Sbjct 25954 TACCGACTGAGCTATCCG 25937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499609243951360