Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_019398.1 Length=178193 Score E Sequences producing significant alignments: (Bits) Value seq732 206 3e-48 seq1066 95.1 1e-14 >seq732 Length=24842 Score = 206 bits (228), Expect = 3e-48 Identities = 667/1019 (65%), Gaps = 61/1019 (6%) Strand=Plus/Plus Query 153772 CGACGCGTTTCAGTCATATGAATACGAAGTAAACACCCTGCATACTGCGAACGGTCAAAC 153831 ||| || || ||||| || |||||||||||||||||||| || || |||||||| || Sbjct 157 CGATGCCTTCCAGTCGCTGGAGTACGAAGTAAACACCCTGCACACCGCCAACGGTCAGAC 216 Query 153832 CCCGTTTGTTACAATTACGTTCGGTACTGGTCAATCCCGATGTGAA---CGCATGATCCA 153888 |||||||| || || || ||| |||| || || | || ||| ||| |||| || Sbjct 217 GCCGTTTGTAACCTTTGGTTTTGGT-CTGGGCA--CCAGCTGGGAATCGCGCCTGATTCA 273 Query 153889 GAAAGCGATTCTGAAAAACCGTATTCGC-GGCCTGGGTAAAGAGGGTATCACTCCGGTAT 153947 | || | || ||| ||||||| |||| ||||| |||||| | ||| ||| |||| | Sbjct 274 GGAATCTATCCTGCGTAACCGTA-TCGCAGGCCTCGGTAAAAACCGTAAAACTGCGGTGT 332 Query 153948 TCCCGAAACTGGT-TATG---TTCATGGAAAAAGGAATCAACCTTGATCCAGAGGATCGC 154003 ||||||||||||| | || ||| | | || | |||| | | || |||| Sbjct 333 TCCCGAAACTGGTGTTTGCGATTCGCG----ATGGTCTGAACCATAAAAAAGGCGATCCG 388 Query 154004 AACTATGACATCAAACAACTTGCCCTGGAATGTGCTTCTAAACGCATGTACCCAGATATC 154063 ||||| ||||||||||| || || ||||| || || || |||||||| || |||||| Sbjct 389 AACTACGACATCAAACAGCTGGCGCTGGAGTGCGCAAGCAAGCGCATGTATCCGGATATC 448 Query 154064 ATTA-----GTTCAGCTAACAACCGTGCTA-TTACTGGTTCTAGCGTTCCTGTATCTCCT 154117 | | | |||| || ||| | | || |||| |||| | | | || Sbjct 449 CTGAACTACGATCAGGTA------GTGAAAGTCACCGGTT----CGTT--TAAAACCCCG 496 Query 154118 ATGGGTTGTCGCAGTTTCCTTAGCGTGTGGCATGATGATAACGGTAATGAAATTCTTGAT 154177 ||||| || ||||| ||||| |||||||| | |||| ||||| | | || | ||| Sbjct 497 ATGGGCTGCCGCAGCTTCCTCGGCGTGTGGGAAAATGAAAACGGCGAGCAGATCCACGAT 556 Query 154178 GGACGTAATAACCTGGGTGTGGTGACAATCAACCTCCCGCGTATTGCTCTTGAAGCACAN 154237 || ||||| ||||| || ||| | | | ||||| |||||||||||||| |||||| | Sbjct 557 GGTCGTAACAACCTCGGCGTGATCAGCCTGAACCTGCCGCGTATTGCTCTGGAAGCAAA- 615 Query 154238 NNNNNNNNNNNNNNNNNNNNNNCTTTTTGGCGTATTCTTGATGATCGTCTGGGTTTGTGC 154297 | || ||| | || ||||| ||||||| || Sbjct 616 --------AGGCGATGAAGCCACCTTCTGGAAGCTGCTGGATGAACGTCTGGTGCTGGCA 667 Query 154298 TTTGAAGCCCTGATGACTCGAATTGATAGTCTACGTGGTGTTAAAGCCAGTGTTGCGCCT 154357 | | || |||||||| || || | | |||| || || ||||| | || || || Sbjct 668 CGTAAGGCGCTGATGACCCGTATCGCTCGTCTCGAAGGCGTGAAAGCGCGCGTGGCCCCG 727 Query 154358 ATCCTGTACACAGAAGGTGCTTTTGGTGTCCGACTGAAACCGGATGATGAAATTCTGGAA 154417 ||||| || | |||||||||| ||| || || || || | || ||||| || ||| Sbjct 728 ATCCTCTATATGGAAGGTGCTTGTGGCGTGCGTCTCAATGCTGACGATGATGTTTCTGAA 787 Query 154418 CTGTTCAAAAATGGGCGTAGTTCTATCAGTCTGGGTTATATTGGACTGCACGAAACGCT- 154476 | |||||||| || ||| ||||| |||||||| || || | |||||||| | Sbjct 788 ATCTTCAAAAACGGTCGTGCGTCTATTTCGCTGGGTTACATCGGCATCCACGAAACCATT 847 Query 154477 --GTTGATGTTTGGCTCAGGCCAGCATCCATTCG--ATCGTATCGGCTCCCAGAAATTAG 154532 | |||| ||| ||| ||||| | || | || | | ||| | | | || Sbjct 848 AACGCGCTGTTCGGC---GGCGAGCATGTTTACGACAACG-AGCAGCTTCGCGCGA-AAG 902 Query 154533 GTCGATTG--ATCATTGAATATCTCCGCGCTGCAACCGAAGCATGG-AAGAAGAAAACTG 154589 || || | || ||||| ||| || ||| || ||| |||||| |||| | Sbjct 903 GT--ATCGCCATTGTTGAACGTCTGCGTCAGGCAGTGGATAAGTGGAAAGAAG-AAACGG 959 Query 154590 GTTTTGGATTCAGTCTGTA-TTCAACCCCAGCGGAATCGCTCTGCCATCGCTTCTGTAAG 154648 ||| ||| |||||||| || || || || | || | || ||| | |||||||| Sbjct 960 GTTATGGTTTCAGTCTCTACAGCACGCCGAGTGAAAAC-CTGTGCGACCGCTTCTGCCGT 1018 Query 154649 CTGGACTTTGAGAAGTTCGGAAGCGTCAAGGGGATCACGGATAAAGGCTGGTACACAAAC 154708 || || || |||| || || ||| | || |||||||| | ||||| ||| Sbjct 1019 CTCGATACTGCTGAGTTTGGCGTGGTGCCGGGCGTGACCGATAAAGGTTACTACACCAAC 1078 Query 154709 AGTTTCCACCTTGACGTTGATCGCAAGGTGACACCGTTCGAGAAAATCGACTATGAAGC 154767 ||||||||||| || || || ||||||| |||| ||| || ||||||| |||||| Sbjct 1079 AGTTTCCACCTCGATGTGGAGAAGAAGGTGAACCCGTACGACAAGATCGACTTTGAAGC 1137 >seq1066 Length=13853 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/79 (87%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 49479 CGGCCCTTTAGCTTAATTGGTTAGAGCGGGTGACTCATAATCGCGCGGTTGCTGGTTCAA 49538 ||||||||||||| | | ||| |||||| | ||||||||||||| ||| |||||||||| Sbjct 260 CGGCCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAA 202 Query 49539 GTCCAGCAGGGGCCACCAA 49557 |||||||| |||||||||| Sbjct 201 GTCCAGCAAGGGCCACCAA 183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570059983845280