Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_019398.1
Length=178193
Score E
Sequences producing significant alignments: (Bits) Value
seq732 206 3e-48
seq1066 95.1 1e-14
>seq732
Length=24842
Score = 206 bits (228), Expect = 3e-48
Identities = 667/1019 (65%), Gaps = 61/1019 (6%)
Strand=Plus/Plus
Query 153772 CGACGCGTTTCAGTCATATGAATACGAAGTAAACACCCTGCATACTGCGAACGGTCAAAC 153831
||| || || ||||| || |||||||||||||||||||| || || |||||||| ||
Sbjct 157 CGATGCCTTCCAGTCGCTGGAGTACGAAGTAAACACCCTGCACACCGCCAACGGTCAGAC 216
Query 153832 CCCGTTTGTTACAATTACGTTCGGTACTGGTCAATCCCGATGTGAA---CGCATGATCCA 153888
|||||||| || || || ||| |||| || || | || ||| ||| |||| ||
Sbjct 217 GCCGTTTGTAACCTTTGGTTTTGGT-CTGGGCA--CCAGCTGGGAATCGCGCCTGATTCA 273
Query 153889 GAAAGCGATTCTGAAAAACCGTATTCGC-GGCCTGGGTAAAGAGGGTATCACTCCGGTAT 153947
| || | || ||| ||||||| |||| ||||| |||||| | ||| ||| |||| |
Sbjct 274 GGAATCTATCCTGCGTAACCGTA-TCGCAGGCCTCGGTAAAAACCGTAAAACTGCGGTGT 332
Query 153948 TCCCGAAACTGGT-TATG---TTCATGGAAAAAGGAATCAACCTTGATCCAGAGGATCGC 154003
||||||||||||| | || ||| | | || | |||| | | || ||||
Sbjct 333 TCCCGAAACTGGTGTTTGCGATTCGCG----ATGGTCTGAACCATAAAAAAGGCGATCCG 388
Query 154004 AACTATGACATCAAACAACTTGCCCTGGAATGTGCTTCTAAACGCATGTACCCAGATATC 154063
||||| ||||||||||| || || ||||| || || || |||||||| || ||||||
Sbjct 389 AACTACGACATCAAACAGCTGGCGCTGGAGTGCGCAAGCAAGCGCATGTATCCGGATATC 448
Query 154064 ATTA-----GTTCAGCTAACAACCGTGCTA-TTACTGGTTCTAGCGTTCCTGTATCTCCT 154117
| | | |||| || ||| | | || |||| |||| | | | ||
Sbjct 449 CTGAACTACGATCAGGTA------GTGAAAGTCACCGGTT----CGTT--TAAAACCCCG 496
Query 154118 ATGGGTTGTCGCAGTTTCCTTAGCGTGTGGCATGATGATAACGGTAATGAAATTCTTGAT 154177
||||| || ||||| ||||| |||||||| | |||| ||||| | | || | |||
Sbjct 497 ATGGGCTGCCGCAGCTTCCTCGGCGTGTGGGAAAATGAAAACGGCGAGCAGATCCACGAT 556
Query 154178 GGACGTAATAACCTGGGTGTGGTGACAATCAACCTCCCGCGTATTGCTCTTGAAGCACAN 154237
|| ||||| ||||| || ||| | | | ||||| |||||||||||||| |||||| |
Sbjct 557 GGTCGTAACAACCTCGGCGTGATCAGCCTGAACCTGCCGCGTATTGCTCTGGAAGCAAA- 615
Query 154238 NNNNNNNNNNNNNNNNNNNNNNCTTTTTGGCGTATTCTTGATGATCGTCTGGGTTTGTGC 154297
| || ||| | || ||||| ||||||| ||
Sbjct 616 --------AGGCGATGAAGCCACCTTCTGGAAGCTGCTGGATGAACGTCTGGTGCTGGCA 667
Query 154298 TTTGAAGCCCTGATGACTCGAATTGATAGTCTACGTGGTGTTAAAGCCAGTGTTGCGCCT 154357
| | || |||||||| || || | | |||| || || ||||| | || || ||
Sbjct 668 CGTAAGGCGCTGATGACCCGTATCGCTCGTCTCGAAGGCGTGAAAGCGCGCGTGGCCCCG 727
Query 154358 ATCCTGTACACAGAAGGTGCTTTTGGTGTCCGACTGAAACCGGATGATGAAATTCTGGAA 154417
||||| || | |||||||||| ||| || || || || | || ||||| || |||
Sbjct 728 ATCCTCTATATGGAAGGTGCTTGTGGCGTGCGTCTCAATGCTGACGATGATGTTTCTGAA 787
Query 154418 CTGTTCAAAAATGGGCGTAGTTCTATCAGTCTGGGTTATATTGGACTGCACGAAACGCT- 154476
| |||||||| || ||| ||||| |||||||| || || | |||||||| |
Sbjct 788 ATCTTCAAAAACGGTCGTGCGTCTATTTCGCTGGGTTACATCGGCATCCACGAAACCATT 847
Query 154477 --GTTGATGTTTGGCTCAGGCCAGCATCCATTCG--ATCGTATCGGCTCCCAGAAATTAG 154532
| |||| ||| ||| ||||| | || | || | | ||| | | | ||
Sbjct 848 AACGCGCTGTTCGGC---GGCGAGCATGTTTACGACAACG-AGCAGCTTCGCGCGA-AAG 902
Query 154533 GTCGATTG--ATCATTGAATATCTCCGCGCTGCAACCGAAGCATGG-AAGAAGAAAACTG 154589
|| || | || ||||| ||| || ||| || ||| |||||| |||| |
Sbjct 903 GT--ATCGCCATTGTTGAACGTCTGCGTCAGGCAGTGGATAAGTGGAAAGAAG-AAACGG 959
Query 154590 GTTTTGGATTCAGTCTGTA-TTCAACCCCAGCGGAATCGCTCTGCCATCGCTTCTGTAAG 154648
||| ||| |||||||| || || || || | || | || ||| | ||||||||
Sbjct 960 GTTATGGTTTCAGTCTCTACAGCACGCCGAGTGAAAAC-CTGTGCGACCGCTTCTGCCGT 1018
Query 154649 CTGGACTTTGAGAAGTTCGGAAGCGTCAAGGGGATCACGGATAAAGGCTGGTACACAAAC 154708
|| || || |||| || || ||| | || |||||||| | ||||| |||
Sbjct 1019 CTCGATACTGCTGAGTTTGGCGTGGTGCCGGGCGTGACCGATAAAGGTTACTACACCAAC 1078
Query 154709 AGTTTCCACCTTGACGTTGATCGCAAGGTGACACCGTTCGAGAAAATCGACTATGAAGC 154767
||||||||||| || || || ||||||| |||| ||| || ||||||| ||||||
Sbjct 1079 AGTTTCCACCTCGATGTGGAGAAGAAGGTGAACCCGTACGACAAGATCGACTTTGAAGC 1137
>seq1066
Length=13853
Score = 95.1 bits (104), Expect = 1e-14
Identities = 69/79 (87%), Gaps = 1/79 (1%)
Strand=Plus/Minus
Query 49479 CGGCCCTTTAGCTTAATTGGTTAGAGCGGGTGACTCATAATCGCGCGGTTGCTGGTTCAA 49538
||||||||||||| | | ||| |||||| | ||||||||||||| ||| ||||||||||
Sbjct 260 CGGCCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAA 202
Query 49539 GTCCAGCAGGGGCCACCAA 49557
|||||||| ||||||||||
Sbjct 201 GTCCAGCAAGGGCCACCAA 183
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570059983845280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |