Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_019401.1
Length=358663
Score E
Sequences producing significant alignments: (Bits) Value
seq1088 89.7 1e-12
>seq1088
Length=13575
Score = 89.7 bits (98), Expect = 1e-12
Identities = 319/491 (65%), Gaps = 12/491 (2%)
Strand=Plus/Plus
Query 150311 GGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTTGATGATCTAATTCAGATTCTT 150370
|| |||| ||||| | ||||||||||| ||| || ||| | || | || |||
Sbjct 2386 GGCAAACAAGATCCGATTATTGGTCGCGATGAGGAAATTCGTGACGTTATCCGCATCCTT 2445
Query 150371 TCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAACACAA 150430
|| || || || || || ||| || ||| | || ||||| |||||||||||||||
Sbjct 2446 TCGCGGAAGACTAAGAACAATCCTGTATTAATCGGAGAACCTGGTGTTGGTAAAACAGCG 2505
Query 150431 ATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGAAAGAT 150490
||||| || || |||| ||||| |||| | ||||| ||||| | | |||||
Sbjct 2506 ATCGTCGAAGGTCTAGCGCAACGGATCGTACGTAAAGATGTCCCAGAAAATCTAAAAGAC 2565
Query 150491 GTTGAAATTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTGGTGAA 150550
| | |||| || | |||||| |||| | ||| || | || | || || |||
Sbjct 2566 AAAACAGTCTTTTCCTTAGACATGGGTTCATTGATTGCAGGAGCCAAATTCCGCGGAGAA 2625
Query 150551 TTCGAAGAACG--TGTAGACAATTTGCTACAAGAACTAAAAGAACGCGAT-GATG--TTA 150605
|| |||||||| | | | ||| || | ||| | ||| || ||| || | ||
Sbjct 2626 TTTGAAGAACGACTTAAAGCCGTTT--TAAAGGAAGTCAAAAAATCAGATGGACGAATTC 2683
Query 150606 TTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGCGGCGGTTCTT 150665
| ||||| || || ||||| |||| || | ||||| ||| || | ||| |
Sbjct 2684 TACTGTTTATTGACGAAATTCATAACATCGTAGGTGCCGGTAAAACAGAAGGCAG---CA 2740
Query 150666 TGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCGTGTCATCGGTG 150725
|||| | ||| | |||||||| || |||| || ||| | | | || ||||
Sbjct 2741 TGGACGCCGGAAATCTTTTAAAACCAATGCTGGCTCGTGGAGAATTGCACTTAATAGGTG 2800
Query 150726 CAACAAC-CTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCACTACAGCGTCGT 150784
| || || ||| ||||| || ||| || | || ||||| || ||| | ||||||||
Sbjct 2801 CTACGACACTA-GATGAGTACCGTCAATATATGGAAAAGGACAAAGCGTTGGAGCGTCGT 2859
Query 150785 TTCATGAAGGT 150795
||| |||||
Sbjct 2860 TTCCAAAAGGT 2870
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1147529292245688
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |