Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq1088 89.7 1e-12 >seq1088 Length=13575 Score = 89.7 bits (98), Expect = 1e-12 Identities = 319/491 (65%), Gaps = 12/491 (2%) Strand=Plus/Plus Query 150311 GGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTTGATGATCTAATTCAGATTCTT 150370 || |||| ||||| | ||||||||||| ||| || ||| | || | || ||| Sbjct 2386 GGCAAACAAGATCCGATTATTGGTCGCGATGAGGAAATTCGTGACGTTATCCGCATCCTT 2445 Query 150371 TCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAACACAA 150430 || || || || || || ||| || ||| | || ||||| ||||||||||||||| Sbjct 2446 TCGCGGAAGACTAAGAACAATCCTGTATTAATCGGAGAACCTGGTGTTGGTAAAACAGCG 2505 Query 150431 ATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGAAAGAT 150490 ||||| || || |||| ||||| |||| | ||||| ||||| | | ||||| Sbjct 2506 ATCGTCGAAGGTCTAGCGCAACGGATCGTACGTAAAGATGTCCCAGAAAATCTAAAAGAC 2565 Query 150491 GTTGAAATTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTGGTGAA 150550 | | |||| || | |||||| |||| | ||| || | || | || || ||| Sbjct 2566 AAAACAGTCTTTTCCTTAGACATGGGTTCATTGATTGCAGGAGCCAAATTCCGCGGAGAA 2625 Query 150551 TTCGAAGAACG--TGTAGACAATTTGCTACAAGAACTAAAAGAACGCGAT-GATG--TTA 150605 || |||||||| | | | ||| || | ||| | ||| || ||| || | || Sbjct 2626 TTTGAAGAACGACTTAAAGCCGTTT--TAAAGGAAGTCAAAAAATCAGATGGACGAATTC 2683 Query 150606 TTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGCGGCGGTTCTT 150665 | ||||| || || ||||| |||| || | ||||| ||| || | ||| | Sbjct 2684 TACTGTTTATTGACGAAATTCATAACATCGTAGGTGCCGGTAAAACAGAAGGCAG---CA 2740 Query 150666 TGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCGTGTCATCGGTG 150725 |||| | ||| | |||||||| || |||| || ||| | | | || |||| Sbjct 2741 TGGACGCCGGAAATCTTTTAAAACCAATGCTGGCTCGTGGAGAATTGCACTTAATAGGTG 2800 Query 150726 CAACAAC-CTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCACTACAGCGTCGT 150784 | || || ||| ||||| || ||| || | || ||||| || ||| | |||||||| Sbjct 2801 CTACGACACTA-GATGAGTACCGTCAATATATGGAAAAGGACAAAGCGTTGGAGCGTCGT 2859 Query 150785 TTCATGAAGGT 150795 ||| ||||| Sbjct 2860 TTCCAAAAGGT 2870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147529292245688