Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_019402.1 Length=76631 Score E Sequences producing significant alignments: (Bits) Value seq732 87.8 9e-13 >seq732 Length=24842 Score = 87.8 bits (96), Expect = 9e-13 Identities = 733/1169 (63%), Gaps = 39/1169 (3%) Strand=Plus/Minus Query 45043 TGTTTGACACGACGCATTACCTCCGCATTCTTACCCTTGTTAAATCCACGGGCATTAGGG 45102 ||||| || || ||| | || || | | |||||| ||||||| ||| |||| ||| Sbjct 1467 TGTTTAACGCGGCGCTTAACTTCTTCCTGCTTACCGGCGTTAAATGGACGTGCATCCGGG 1408 Query 45103 CTCCCTAGGTAGCCACACACGCGACGGATTACTGACAT-CGACTTGCTATCACTGTTACC 45161 || |||| || || |||||||| || | || |||| || || ||| |||||| Sbjct 1407 CTACCTAAATATCCGCACACGCGGCGAGTCACCGACACACGGGAGGCG-TCATGGTTACC 1349 Query 45162 ACAACTTGGGCAGTGGAAGCCGT--CTTCATCAATCTTGAATTCGCCTTCAAAGTGACAT 45219 ||| | ||||| |||||| | || || || ||| || || |||| ||| Sbjct 1348 ACATTTCGGGCAAGTGAAGCCTTTGCTGGTGCACTC--GAACTCACCGGTAAAGCCACAC 1291 Query 45220 TTCAGACACTTATCACTTGGAGTGTTTGTGCCCAGATAATCCAG--CTTGGACATACCA- 45276 | |||| |||| | || || || ||||| |||| | | | || ||| | Sbjct 1290 TCGTAGCACTCATCAATCGGTGTATTGGTGCCG---TAATACGGTACATGCTGATAGCTG 1234 Query 45277 TAATCCCAGATGGTTTCTAGAGCTTCCAAGTTATGGCGAACATTCGGAGCTTCGAAATAG 45336 |||||||||| ||| || || | || ||| || ||| || ||| ||| ||| Sbjct 1233 TAATCCCAGACATCTTCCAGCGCCTTCAGGTTGTGCTGAATGTTTGGATACTCGCCGTAG 1174 Query 45337 CTAATATGACCCGCACTTGAAATATAATGATAAGGCGCTTCAAAGTCAATCTTGTCGAAA 45396 | ||| ||| | | | | | ||||||||||||||||| ||||||||| | Sbjct 1173 CAAATGAAACCACCGTTCGCCAGCGGCGGGTAAGGCGCTTCAAAGTCGATCTTGTCGTAC 1114 Query 45397 GGGTCAGTATGCTTATAAACATCCTGATGGAAGCTGTTAGTGTAATAATCTTTGTCAGTG 45456 |||| | ||| | ||||| | ||||| ||||| ||||| ||| |||| || || Sbjct 1113 GGGTTCACCTTCTTCTCCACATCGAGGTGGAAACTGTTGGTGTAGTAACCTTTATCGGTC 1054 Query 45457 ACACCAGCAATCTCCCCAAATTGTTCTTTGTCCAAACGACAGAAGCGGTCACACAGAGAC 45516 || || | | | | ||||| | | | || | ||| ||||||||||| ||||| Sbjct 1053 ACGCCCGGCACCACGCCAAACTCAGCAGTATCGAGACGGCAGAAGCGGTCGCACAGGTTT 994 Query 45517 TCTGAAGGTGTAGCGTATAAGCTGTAACCCCAGCCTTCCTCTGATTCATCCTCCCACTTA 45576 || || || ||| | ||| |||| | | | | ||| || | ||||||| Sbjct 993 TCACTCGGCGTGCTGTAGAGACTGAAACCATAAC------CCGTTTCTTCTTTCCACTTA 940 Query 45577 TCAACTGCTTGGCGGAGGTGTGCAACCAAACCAAT-GCAAGCATCAGAAGATGCCC--AA 45633 || ||||| || || || || |||| | | || | | |||| ||| | Sbjct 939 TCCACTGCCTGACGCAGACGTTCAACAATGGCGATACCTTTCGCGCGAAGCTGCTCGTTG 880 Query 45634 TCATCAGTAGGTGCAATTCCCTGCATTGTCAAACCAACTTCATGGAGTCCGATGTATCCC 45693 || | | | | | || || | | ||| |||| |||||||| ||| Sbjct 879 TCGTAAACATGCTCGCCGCCGAACAGCGCGTTAATGGTTTCGTGGATGCCGATGTAACCC 820 Query 45694 AAGCTAATAGAGCTTCGACCGTGTTTGAAGATATTGATGATATCATCGTCGGGTTTGAGA 45753 | |||||| ||||||| ||||||||| | | ||||||||| | |||||| Sbjct 819 AGCGAAATAGACGCACGACCGTTTTTGAAGATTTCAGAAACATCATCGTCAGCATTGAGA 760 Query 45754 CGAACTCCAAACGCTCCCTCGGTGTAGAGAATTGGGGCGACAGCAGCTTTAACACCACGT 45813 || || ||| | || || || | ||||| || ||||| || ||||| || || Sbjct 759 CGCACGCCACAAGCACCTTCCATATAGAGGATCGGGGCCACGCGCGCTTTCACGCCTTCG 700 Query 45814 AGGCGTTCAATGCGGGT-ATCAAGTGCTCGTT--TAGCAAGGTCAAGGCGTTCGTCAAGG 45870 || || | || ||||| |||| || | || || || | || ||||| || || Sbjct 699 AGACGAGCGATACGGGTCATCA---GCGCCTTACGTGCCAGCACCAGACGTTCATCCAGC 643 Query 45871 ATAGTGTAAAACTTCTCCCAATCTCCGCCTGATTCGATGGCAATACGAGGAAGGTTGAGA 45930 | | | || | | ||| || || ||| | |||||||| || ||||| || Sbjct 642 AGCTTCCAGAAGGTGGCTTCATCGCCTTTTGCTTCCAGAGCAATACGCGGCAGGTTCAGG 583 Query 45931 CTAACAACGCCGAGGTTGTTGCGTCCGTCGAGCACCTCATTTCCATCTCCGTCCTTCCAC 45990 || | |||||||||||||| || || ||| | | || | || | | | | | |||| Sbjct 582 CTGATCACGCCGAGGTTGTTACGACCATCGTGGATCTGCTCGCCGTTTTCATTTTCCCAC 523 Query 45991 ACACTGAGGAAAGAACGGCATCCCATAGGACTAACAGGTACACTTGAGCCAGTGATACCT 46050 || | |||||| ||||| ||||| || | || || || || ||| || | Sbjct 522 ACGCCGAGGAAGCTGCGGCAGCCCATCGGGGT----TTTAAAC--GAACCGGTG--ACTT 471 Query 46051 CGGTTAGCT-TTCG-CGCTGATGATATCTGGATACAGACGCTTGGAGGAGCATTCAAGTG 46108 || || ||| | | | |||||| ||||||| |||||| | ||| || || | Sbjct 470 TCACTACCTGATCGTAGTTCAGGATATCCGGATACATGCGCTTGCTTGCGCACTCCAGCG 411 Query 46109 CAAGCTGCTTAATATCATAATTCGGGTCTTCCGGGTTTA-AGTTAACACCCTCGTCCATG 46167 | ||||| || || || || ||||| || || |||| ||| | ||| ||| || Sbjct 410 CCAGCTGTTTGATGTCGTAGTTCGGATC-GCCTTTTTTATGGTTCAGACCATCGCGAATC 352 Query 46168 AACATTACGAGTTTCGGGAAAACCGCAGT 46196 | || ||||||||||| |||||||| Sbjct 351 GCAAACACCAGTTTCGGGAACACCGCAGT 323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 245081985662272