Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_019402.1
Length=76631
Score E
Sequences producing significant alignments: (Bits) Value
seq732 87.8 9e-13
>seq732
Length=24842
Score = 87.8 bits (96), Expect = 9e-13
Identities = 733/1169 (63%), Gaps = 39/1169 (3%)
Strand=Plus/Minus
Query 45043 TGTTTGACACGACGCATTACCTCCGCATTCTTACCCTTGTTAAATCCACGGGCATTAGGG 45102
||||| || || ||| | || || | | |||||| ||||||| ||| |||| |||
Sbjct 1467 TGTTTAACGCGGCGCTTAACTTCTTCCTGCTTACCGGCGTTAAATGGACGTGCATCCGGG 1408
Query 45103 CTCCCTAGGTAGCCACACACGCGACGGATTACTGACAT-CGACTTGCTATCACTGTTACC 45161
|| |||| || || |||||||| || | || |||| || || ||| ||||||
Sbjct 1407 CTACCTAAATATCCGCACACGCGGCGAGTCACCGACACACGGGAGGCG-TCATGGTTACC 1349
Query 45162 ACAACTTGGGCAGTGGAAGCCGT--CTTCATCAATCTTGAATTCGCCTTCAAAGTGACAT 45219
||| | ||||| |||||| | || || || ||| || || |||| |||
Sbjct 1348 ACATTTCGGGCAAGTGAAGCCTTTGCTGGTGCACTC--GAACTCACCGGTAAAGCCACAC 1291
Query 45220 TTCAGACACTTATCACTTGGAGTGTTTGTGCCCAGATAATCCAG--CTTGGACATACCA- 45276
| |||| |||| | || || || ||||| |||| | | | || ||| |
Sbjct 1290 TCGTAGCACTCATCAATCGGTGTATTGGTGCCG---TAATACGGTACATGCTGATAGCTG 1234
Query 45277 TAATCCCAGATGGTTTCTAGAGCTTCCAAGTTATGGCGAACATTCGGAGCTTCGAAATAG 45336
|||||||||| ||| || || | || ||| || ||| || ||| ||| |||
Sbjct 1233 TAATCCCAGACATCTTCCAGCGCCTTCAGGTTGTGCTGAATGTTTGGATACTCGCCGTAG 1174
Query 45337 CTAATATGACCCGCACTTGAAATATAATGATAAGGCGCTTCAAAGTCAATCTTGTCGAAA 45396
| ||| ||| | | | | | ||||||||||||||||| ||||||||| |
Sbjct 1173 CAAATGAAACCACCGTTCGCCAGCGGCGGGTAAGGCGCTTCAAAGTCGATCTTGTCGTAC 1114
Query 45397 GGGTCAGTATGCTTATAAACATCCTGATGGAAGCTGTTAGTGTAATAATCTTTGTCAGTG 45456
|||| | ||| | ||||| | ||||| ||||| ||||| ||| |||| || ||
Sbjct 1113 GGGTTCACCTTCTTCTCCACATCGAGGTGGAAACTGTTGGTGTAGTAACCTTTATCGGTC 1054
Query 45457 ACACCAGCAATCTCCCCAAATTGTTCTTTGTCCAAACGACAGAAGCGGTCACACAGAGAC 45516
|| || | | | | ||||| | | | || | ||| ||||||||||| |||||
Sbjct 1053 ACGCCCGGCACCACGCCAAACTCAGCAGTATCGAGACGGCAGAAGCGGTCGCACAGGTTT 994
Query 45517 TCTGAAGGTGTAGCGTATAAGCTGTAACCCCAGCCTTCCTCTGATTCATCCTCCCACTTA 45576
|| || || ||| | ||| |||| | | | | ||| || | |||||||
Sbjct 993 TCACTCGGCGTGCTGTAGAGACTGAAACCATAAC------CCGTTTCTTCTTTCCACTTA 940
Query 45577 TCAACTGCTTGGCGGAGGTGTGCAACCAAACCAAT-GCAAGCATCAGAAGATGCCC--AA 45633
|| ||||| || || || || |||| | | || | | |||| ||| |
Sbjct 939 TCCACTGCCTGACGCAGACGTTCAACAATGGCGATACCTTTCGCGCGAAGCTGCTCGTTG 880
Query 45634 TCATCAGTAGGTGCAATTCCCTGCATTGTCAAACCAACTTCATGGAGTCCGATGTATCCC 45693
|| | | | | | || || | | ||| |||| |||||||| |||
Sbjct 879 TCGTAAACATGCTCGCCGCCGAACAGCGCGTTAATGGTTTCGTGGATGCCGATGTAACCC 820
Query 45694 AAGCTAATAGAGCTTCGACCGTGTTTGAAGATATTGATGATATCATCGTCGGGTTTGAGA 45753
| |||||| ||||||| ||||||||| | | ||||||||| | ||||||
Sbjct 819 AGCGAAATAGACGCACGACCGTTTTTGAAGATTTCAGAAACATCATCGTCAGCATTGAGA 760
Query 45754 CGAACTCCAAACGCTCCCTCGGTGTAGAGAATTGGGGCGACAGCAGCTTTAACACCACGT 45813
|| || ||| | || || || | ||||| || ||||| || ||||| || ||
Sbjct 759 CGCACGCCACAAGCACCTTCCATATAGAGGATCGGGGCCACGCGCGCTTTCACGCCTTCG 700
Query 45814 AGGCGTTCAATGCGGGT-ATCAAGTGCTCGTT--TAGCAAGGTCAAGGCGTTCGTCAAGG 45870
|| || | || ||||| |||| || | || || || | || ||||| || ||
Sbjct 699 AGACGAGCGATACGGGTCATCA---GCGCCTTACGTGCCAGCACCAGACGTTCATCCAGC 643
Query 45871 ATAGTGTAAAACTTCTCCCAATCTCCGCCTGATTCGATGGCAATACGAGGAAGGTTGAGA 45930
| | | || | | ||| || || ||| | |||||||| || ||||| ||
Sbjct 642 AGCTTCCAGAAGGTGGCTTCATCGCCTTTTGCTTCCAGAGCAATACGCGGCAGGTTCAGG 583
Query 45931 CTAACAACGCCGAGGTTGTTGCGTCCGTCGAGCACCTCATTTCCATCTCCGTCCTTCCAC 45990
|| | |||||||||||||| || || ||| | | || | || | | | | | ||||
Sbjct 582 CTGATCACGCCGAGGTTGTTACGACCATCGTGGATCTGCTCGCCGTTTTCATTTTCCCAC 523
Query 45991 ACACTGAGGAAAGAACGGCATCCCATAGGACTAACAGGTACACTTGAGCCAGTGATACCT 46050
|| | |||||| ||||| ||||| || | || || || || ||| || |
Sbjct 522 ACGCCGAGGAAGCTGCGGCAGCCCATCGGGGT----TTTAAAC--GAACCGGTG--ACTT 471
Query 46051 CGGTTAGCT-TTCG-CGCTGATGATATCTGGATACAGACGCTTGGAGGAGCATTCAAGTG 46108
|| || ||| | | | |||||| ||||||| |||||| | ||| || || |
Sbjct 470 TCACTACCTGATCGTAGTTCAGGATATCCGGATACATGCGCTTGCTTGCGCACTCCAGCG 411
Query 46109 CAAGCTGCTTAATATCATAATTCGGGTCTTCCGGGTTTA-AGTTAACACCCTCGTCCATG 46167
| ||||| || || || || ||||| || || |||| ||| | ||| ||| ||
Sbjct 410 CCAGCTGTTTGATGTCGTAGTTCGGATC-GCCTTTTTTATGGTTCAGACCATCGCGAATC 352
Query 46168 AACATTACGAGTTTCGGGAAAACCGCAGT 46196
| || ||||||||||| ||||||||
Sbjct 351 GCAAACACCAGTTTCGGGAACACCGCAGT 323
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 245081985662272
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |