Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq2319 91.5 3e-13 >seq2319 Length=3243 Score = 91.5 bits (100), Expect = 3e-13 Identities = 118/160 (74%), Gaps = 5/160 (3%) Strand=Plus/Minus Query 68615 GTGTAGCTCAGTTGGTAGAGCAGCGGATCGATAATCCGCCGGTCGCCGGTTCGATCCCGG 68674 ||||||||||||||| |||||| | | | || | | |||| |||||||| |||| Sbjct 1065 GTGTAGCTCAGTTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCATCGGTTCGAACCCGT 1006 Query 68675 CCGCTAGGTCCAGTTTCTGATGGGG-CATAGCTCAGG-GGTTAGAGCGCGCGCTTGATAA 68732 | | |||| ||||| ||||||||||| ||||||||||| ||| |||||| Sbjct 1005 TC---ATCTCCACCACGGTATGGGCTCATAGCTCAGGTGGTTAGAGCGCACGCCTGATAA 949 Query 68733 GCGTGAGGCCGTTGGTTCGAGACCAACTGTCCCTACCAAA 68772 |||||||| || ||||||||| ||| || || |||||| Sbjct 948 GCGTGAGGTCGGTGGTTCGAGTCCACTTGAGCCCACCAAA 909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895719864935520