Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_019408.1 Length=223720 Score E Sequences producing significant alignments: (Bits) Value seq2319 86.0 9e-12 >seq2319 Length=3243 Score = 86.0 bits (94), Expect = 9e-12 Identities = 111/149 (74%), Gaps = 6/149 (4%) Strand=Plus/Minus Query 52124 GTGTAGCTCAGTTGGTAGAGCAGCGGACCGATAATCCGCCCGTCCCTGGTTCGAGTCCAG 52183 ||||||||||||||| |||||| | | || | | ||| ||||||| || Sbjct 1065 GTGTAGCTCAGTTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCATCGGTTCGAACCCGT 1006 Query 52184 GCATTTGCACCATTTCTG-ATGTGG-CATAGCTCAGG-GGTCAGAGCGCGCGCTTGATAA 52240 ||| | ||||| | | ||| | ||||||||||| ||| ||||||| ||| |||||| Sbjct 1005 TCATCTCCACCA---CGGTATGGGCTCATAGCTCAGGTGGTTAGAGCGCACGCCTGATAA 949 Query 52241 GCGTGAGGTCGGTGGTTCGAGACCACCTG 52269 ||||||||||||||||||||| |||| || Sbjct 948 GCGTGAGGTCGGTGGTTCGAGTCCACTTG 920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715738815436800