Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_019408.1
Length=223720
Score E
Sequences producing significant alignments: (Bits) Value
seq2319 86.0 9e-12
>seq2319
Length=3243
Score = 86.0 bits (94), Expect = 9e-12
Identities = 111/149 (74%), Gaps = 6/149 (4%)
Strand=Plus/Minus
Query 52124 GTGTAGCTCAGTTGGTAGAGCAGCGGACCGATAATCCGCCCGTCCCTGGTTCGAGTCCAG 52183
||||||||||||||| |||||| | | || | | ||| ||||||| ||
Sbjct 1065 GTGTAGCTCAGTTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCATCGGTTCGAACCCGT 1006
Query 52184 GCATTTGCACCATTTCTG-ATGTGG-CATAGCTCAGG-GGTCAGAGCGCGCGCTTGATAA 52240
||| | ||||| | | ||| | ||||||||||| ||| ||||||| ||| ||||||
Sbjct 1005 TCATCTCCACCA---CGGTATGGGCTCATAGCTCAGGTGGTTAGAGCGCACGCCTGATAA 949
Query 52241 GCGTGAGGTCGGTGGTTCGAGACCACCTG 52269
||||||||||||||||||||| |||| ||
Sbjct 948 GCGTGAGGTCGGTGGTTCGAGTCCACTTG 920
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 715738815436800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |