Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_019418.1 Length=37282 Score E Sequences producing significant alignments: (Bits) Value seq729 125 2e-24 >seq729 Length=25020 Score = 125 bits (138), Expect = 2e-24 Identities = 218/314 (69%), Gaps = 6/314 (2%) Strand=Plus/Plus Query 29409 TTCCAACAATTGAAAACTACTTGCAATAACCTCTGTCACATACACGCGCTGTCCTTGTTG 29468 |||||| ||||| ||| | |||| ||| ||||||||||| || || || ||||| || Sbjct 1014 TTCCAATAATTGGAAATTCTCAGCAACAACTTCTGTCACATAGACACGTTGCCCTTGCTG 1073 Query 29469 ATTGTCATAGTAGCGTGTTTGAATGTTGCCTGTAATACCAATCAATGCGCCTTTCTTAGC 29528 ||| ||||| | | |||||| || ||| || | ||| | | | ||||| || Sbjct 1074 ATTTTCATAATTTCTTGTTTGGATACGGCCAGTCACACCTAAAAGAGTTCCTTTGCGCGC 1133 Query 29529 CCAATTAGCAAGATTTTCTGCCGCTTGTCTCCAAATAACACAATTAATAAAATCAGCCTC 29588 ||||||| | | ||||||| | || | |||||| |||||||| |||||||| ||||| Sbjct 1134 ATAATTAGCTAAAGTTTCTGCTGATTTCCGCCAAATTACACAATTGATAAAATCCGCCTC 1193 Query 29589 ACGCTCTCCATTTTCATTTTTGAATGGGCGATTTACTGCAAGGGTAAAAGTGGCAA---C 29645 || | || ||| ||| | || ||||| || || | ||||| ||||||| | Sbjct 1194 GCGATTCCCGCTTTGATTCGTAAAATTACGATTCACAGCTAAAGTAAACGTGGCAACACC 1253 Query 29646 TGCAACATTTGATGGTGTATATCTTAATTCAGCATCTCTAGTCAGTCGCCCTACTAAAAT 29705 || | |||||| |||| || | ||| |||| ||| | || | || || |||| | Sbjct 1254 TGTACCATTTG-CGGTG--TAGCGTAAATCAGGATCCTTTGTTAAACGACCAACTAGTAC 1310 Query 29706 AACGTTATTTATCA 29719 ||| ||||| |||| Sbjct 1311 AACATTATTAATCA 1324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119174918129568