Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_019418.1
Length=37282
Score E
Sequences producing significant alignments: (Bits) Value
seq729 125 2e-24
>seq729
Length=25020
Score = 125 bits (138), Expect = 2e-24
Identities = 218/314 (69%), Gaps = 6/314 (2%)
Strand=Plus/Plus
Query 29409 TTCCAACAATTGAAAACTACTTGCAATAACCTCTGTCACATACACGCGCTGTCCTTGTTG 29468
|||||| ||||| ||| | |||| ||| ||||||||||| || || || ||||| ||
Sbjct 1014 TTCCAATAATTGGAAATTCTCAGCAACAACTTCTGTCACATAGACACGTTGCCCTTGCTG 1073
Query 29469 ATTGTCATAGTAGCGTGTTTGAATGTTGCCTGTAATACCAATCAATGCGCCTTTCTTAGC 29528
||| ||||| | | |||||| || ||| || | ||| | | | ||||| ||
Sbjct 1074 ATTTTCATAATTTCTTGTTTGGATACGGCCAGTCACACCTAAAAGAGTTCCTTTGCGCGC 1133
Query 29529 CCAATTAGCAAGATTTTCTGCCGCTTGTCTCCAAATAACACAATTAATAAAATCAGCCTC 29588
||||||| | | ||||||| | || | |||||| |||||||| |||||||| |||||
Sbjct 1134 ATAATTAGCTAAAGTTTCTGCTGATTTCCGCCAAATTACACAATTGATAAAATCCGCCTC 1193
Query 29589 ACGCTCTCCATTTTCATTTTTGAATGGGCGATTTACTGCAAGGGTAAAAGTGGCAA---C 29645
|| | || ||| ||| | || ||||| || || | ||||| ||||||| |
Sbjct 1194 GCGATTCCCGCTTTGATTCGTAAAATTACGATTCACAGCTAAAGTAAACGTGGCAACACC 1253
Query 29646 TGCAACATTTGATGGTGTATATCTTAATTCAGCATCTCTAGTCAGTCGCCCTACTAAAAT 29705
|| | |||||| |||| || | ||| |||| ||| | || | || || |||| |
Sbjct 1254 TGTACCATTTG-CGGTG--TAGCGTAAATCAGGATCCTTTGTTAAACGACCAACTAGTAC 1310
Query 29706 AACGTTATTTATCA 29719
||| ||||| ||||
Sbjct 1311 AACATTATTAATCA 1324
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 119174918129568
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |