Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq18 109 1e-18 >seq18 Length=263653 Score = 109 bits (120), Expect = 1e-18 Identities = 233/347 (67%), Gaps = 6/347 (2%) Strand=Plus/Minus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 || || ||| ||||||| | ||| || ||| || ||||||| || | | || Sbjct 150336 TCATCTCGGGAGATGAGCTCATTGCTAAAAGTGAGCCCTGGCATGAGACCACGTTTCTTT 150277 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCG 48274 ||||||||||| | || || ||||| ||||| || ||||| || || || || || Sbjct 150276 AGCCAGAAAATCGAAGCAAAGCTTCCAGAAAAGAATATACCCTCGACGGCGGCAAATGCT 150217 Query 48275 GTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCC 48334 || | |||| ||| | | || ||||| | ||||| || ||||| || ||| Sbjct 150216 ACAAGTCGATCTCTGAATGGTGACTTTTTGTCCGCTATCCATCGTAGAGCCCAATCGGCC 150157 Query 48335 TTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTGCG 48394 |||||||| | |||||| || ||||| ||||| ||| || | | || || || | Sbjct 150156 TTCTTCTTAACGCATGGAATGGTCTCAATGGCGTTGAACAGGTGGTGGCGTTCCGCTTCA 150097 Query 48395 TCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATA 48451 || || ||| || | | ||||| | |||||||| ||||| | |||||||||| Sbjct 150096 TCTTGAATATACGTGTCAATCAGCAGACT---ATACATCTCCGAGTGAATATTCTCTATA 150040 Query 48452 GCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTC 48498 || || ||||| ||||| ||| | ||||| |||||| | ||| Sbjct 150039 GCAATTTGGAAGCCGTAAAAGCAGCGAGCCTCTGTCACCTGAATTTC 149993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931484406871040