Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq18 109 1e-18
>seq18
Length=263653
Score = 109 bits (120), Expect = 1e-18
Identities = 233/347 (67%), Gaps = 6/347 (2%)
Strand=Plus/Minus
Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214
|| || ||| ||||||| | ||| || ||| || ||||||| || | | ||
Sbjct 150336 TCATCTCGGGAGATGAGCTCATTGCTAAAAGTGAGCCCTGGCATGAGACCACGTTTCTTT 150277
Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCG 48274
||||||||||| | || || ||||| ||||| || ||||| || || || || ||
Sbjct 150276 AGCCAGAAAATCGAAGCAAAGCTTCCAGAAAAGAATATACCCTCGACGGCGGCAAATGCT 150217
Query 48275 GTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCC 48334
|| | |||| ||| | | || ||||| | ||||| || ||||| || |||
Sbjct 150216 ACAAGTCGATCTCTGAATGGTGACTTTTTGTCCGCTATCCATCGTAGAGCCCAATCGGCC 150157
Query 48335 TTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTGCG 48394
|||||||| | |||||| || ||||| ||||| ||| || | | || || || |
Sbjct 150156 TTCTTCTTAACGCATGGAATGGTCTCAATGGCGTTGAACAGGTGGTGGCGTTCCGCTTCA 150097
Query 48395 TCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATA 48451
|| || ||| || | | ||||| | |||||||| ||||| | ||||||||||
Sbjct 150096 TCTTGAATATACGTGTCAATCAGCAGACT---ATACATCTCCGAGTGAATATTCTCTATA 150040
Query 48452 GCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTC 48498
|| || ||||| ||||| ||| | ||||| |||||| | |||
Sbjct 150039 GCAATTTGGAAGCCGTAAAAGCAGCGAGCCTCTGTCACCTGAATTTC 149993
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931484406871040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |