Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_019507.1 Length=182833 Score E Sequences producing significant alignments: (Bits) Value seq1870 84.2 3e-11 seq1599 84.2 3e-11 >seq1870 Length=4832 Score = 84.2 bits (92), Expect = 3e-11 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 167466 TGGTCGGGGTGAAAGGATTCGAACCTTCGGCCCCTTGGTCCCAAACCAAGTGCGCTAACC 167525 || ||||| || ||||||||||||| || ||||||||||||||||||||||| || ||| Sbjct 157 TGATCGGGAAGACAGGATTCGAACCTGCGACCCCTTGGTCCCAAACCAAGTGCTCT-ACC 215 Query 167526 AGACTGCGCTACACCCCGAAA 167546 | ||| ||||| ||||||| Sbjct 216 AAGCTGAGCTACTTCCCGAAA 236 >seq1599 Length=6876 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 167469 TCGGGGTGAAAGGATTCGAACCTTCGGCCCCTTGGTCCCAAACCAAGTGCGCTAACCAGA 167528 ||||| || ||||||||||||| || ||||||||||||||||||||||| || |||| Sbjct 1360 TCGGGAAGACAGGATTCGAACCTGCGACCCCTTGGTCCCAAACCAAGTGCTCT-ACCAAG 1302 Query 167529 CTGCGCTACACCCCGAAA 167546 ||| ||||| ||||||| Sbjct 1301 CTGAGCTACTTCCCGAAA 1284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584907212491680